当前解析结果
SmilChr06G000353| 统一新 Gene ID | SmilChr06G000353 |
|---|---|
| 名称 | SmilChr06G000353 |
| 描述 | dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 2676633 - 2679110 / - |
| NCBI Gene ID | LOC130987900 |
|---|---|
| GeneID | 130987900 |
| locus_tag | - |
| NCBI Name | LOC130987900 |
| 原始查询 | SmilChr06G000353 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like |
| 产物 | dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like |
| Arabidopsis | AT5G19690 (STT3A)staurosporin and temperature sensitive 3-like A [Source:NCBI gene (formerly Entrezgene);Acc:832089] identity=65.8; qcov=0.766; evalue=0; confidence=high |
| Rice | Os05g0519900- identity=63.4; qcov=0.775; evalue=0; confidence=high |
| GO | GO:0004576 (oligosaccharyl transferase activity); GO:0006486 (GO:0006486); GO:0016020 (membrane) |
| KEGG | smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02516 (STT3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987900 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057767584.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057767584.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767584.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767584.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767584.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:2677069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B24,C34 |
Chr6:2677180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr6:2677637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr6:2678231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr6:2678250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B36,B52,B6,B84,B88 |
Chr6:2678274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B95,C21,C51,C73 |
Chr6:2678276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,B28 |
Chr6:2678283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B37,C78 |
Chr6:2678291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B120,B28,D4 |
Chr6:2678300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,C41 |
Chr6:2678303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr6:2678327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C37,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767584.1PF02516
STT3 269-327 aa
PF02516
STT3 327-546 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767584.1 |
Pfam | PF02516 |
STT3 | Domain | 269 | 327 | 7.7e-64 | 217.4 | Oligosaccharyl transferase STT3, N-terminal |
XP_057767584.1 |
Pfam | PF02516 |
STT3 | Domain | 327 | 546 | 7.7e-64 | 217.4 | Oligosaccharyl transferase STT3, N-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。