Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000354`

染色体: Chr06 坐标: 2682691-2695290 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000354`
名称	SmilChr06G000354
描述	protein transport protein SEC24 C-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	2682691 - 2695290 / `+`

ID 对照

NCBI Gene ID	`LOC130987902`
GeneID	`130987902`
locus_tag	`-`
NCBI Name	`LOC130987902`
原始查询	`SmilChr06G000354`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein transport protein SEC24 C-like
产物	protein transport protein SEC24 C-like
Arabidopsis	`AT4G32640` (AT4G32640) Sec23/Sec24 protein transport family protein [Source:NCBI gene (formerly Entrezgene);Acc:829399] identity=65.1; qcov=1.04; evalue=0; confidence=high
Rice	`Os12g0430000` - identity=65.7; qcov=0.859; evalue=0; confidence=high
GO	GO:0000149 (SNARE binding); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0008270 (zinc ion binding); GO:0030127 (COPII vesicle coat); GO:0070971 (endoplasmic reticulum exit site); GO:0090110 (COPII-coated vesicle cargo loading)
KEGG	smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00626 (Gelsolin); PF04810 (zf-Sec23_Sec24); PF04811 (Sec23_trunk); PF04815 (Sec23_helical); PF08033 (Sec23_BS)
InterPro	-
eggNOG	-
NR	GeneID:130987902

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	1.00000	`XP_057767586.1`
2	Cytoplasm	细胞质	0.80000	`XP_057767586.1`
3	Vesicle	囊泡	0.80000	`XP_057767586.1`
4	Endosome	内体	0.40000	`XP_057767587.1`
5	Nucleus	细胞核	0.20000	`XP_057767586.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:2683820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B5,C26,C36,C53,C55
`Chr6:2684055`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr6:2684127`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B18
`Chr6:2684127`	`AC`	`A`	1bp_deletion	CDS_variant	1	B18
`Chr6:2686280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B29,C24,C72,C9
`Chr6:2687085`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr6:2688627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr6:2688633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,C53
`Chr6:2689837`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B49
`Chr6:2689837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:2690008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B22,C16,C34
`Chr6:2692590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767586.1

1107 aa

554

1107

zf-Sec23_Sec24

Sec23_trunk

Sec23_BS

Sec23_helical

Gelsolin

PF04810 zf-Sec23_Sec24 416-454 aa PF04811 Sec23_trunk 491-731 aa PF08033 Sec23_BS 736-820 aa PF04815 Sec23_helical 831-929 aa PF00626 Gelsolin 978-1048 aa

XP_057767587.1

1081 aa

540

1081

zf-Sec23_Sec24

Sec23_trunk

Sec23_BS

Sec23_helical

Gelsolin

PF04810 zf-Sec23_Sec24 416-454 aa PF04811 Sec23_trunk 491-731 aa PF08033 Sec23_BS 736-820 aa PF04815 Sec23_helical 831-929 aa PF00626 Gelsolin 952-1022 aa

XP_057767588.1

1081 aa

540

1081

zf-Sec23_Sec24

Sec23_trunk

Sec23_BS

Sec23_helical

Gelsolin

PF04810 zf-Sec23_Sec24 416-454 aa PF04811 Sec23_trunk 491-731 aa PF08033 Sec23_BS 736-820 aa PF04815 Sec23_helical 831-929 aa PF00626 Gelsolin 952-1022 aa

XP_057767589.1

1081 aa

540

1081

zf-Sec23_Sec24

Sec23_trunk

Sec23_BS

Sec23_helical

Gelsolin

PF04810 zf-Sec23_Sec24 416-454 aa PF04811 Sec23_trunk 491-731 aa PF08033 Sec23_BS 736-820 aa PF04815 Sec23_helical 831-929 aa PF00626 Gelsolin 952-1022 aa

XP_057767590.1

1081 aa

540

1081

zf-Sec23_Sec24

Sec23_trunk

Sec23_BS

Sec23_helical

Gelsolin

PF04810 zf-Sec23_Sec24 416-454 aa PF04811 Sec23_trunk 491-731 aa PF08033 Sec23_BS 736-820 aa PF04815 Sec23_helical 831-929 aa PF00626 Gelsolin 952-1022 aa

XP_057767591.1

1081 aa

540

1081

zf-Sec23_Sec24

Sec23_trunk

Sec23_BS

Sec23_helical

Gelsolin

PF04810 zf-Sec23_Sec24 416-454 aa PF04811 Sec23_trunk 491-731 aa PF08033 Sec23_BS 736-820 aa PF04815 Sec23_helical 831-929 aa PF00626 Gelsolin 952-1022 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767586.1`	Pfam	`PF04810`	zf-Sec23_Sec24	Domain	416	454	2.1e-16	60.4	Sec23/Sec24 zinc finger
`XP_057767586.1`	Pfam	`PF04811`	Sec23_trunk	Domain	491	731	4.7e-79	266.1	Sec23/Sec24 trunk domain
`XP_057767586.1`	Pfam	`PF08033`	Sec23_BS	Domain	736	820	7.2e-27	94.5	Sec23/Sec24 beta-sandwich domain
`XP_057767586.1`	Pfam	`PF04815`	Sec23_helical	Domain	831	929	6e-24	84.5	Sec23/Sec24 helical domain
`XP_057767586.1`	Pfam	`PF00626`	Gelsolin	Domain	978	1048	8.5e-10	39.1	Gelsolin repeat
`XP_057767587.1`	Pfam	`PF04810`	zf-Sec23_Sec24	Domain	416	454	2e-16	60.4	Sec23/Sec24 zinc finger
`XP_057767587.1`	Pfam	`PF04811`	Sec23_trunk	Domain	491	731	4.5e-79	266.1	Sec23/Sec24 trunk domain
`XP_057767587.1`	Pfam	`PF08033`	Sec23_BS	Domain	736	820	6.9e-27	94.6	Sec23/Sec24 beta-sandwich domain
`XP_057767587.1`	Pfam	`PF04815`	Sec23_helical	Domain	831	929	5.8e-24	84.6	Sec23/Sec24 helical domain
`XP_057767587.1`	Pfam	`PF00626`	Gelsolin	Domain	952	1022	8.3e-10	39.1	Gelsolin repeat
`XP_057767588.1`	Pfam	`PF04810`	zf-Sec23_Sec24	Domain	416	454	2e-16	60.4	Sec23/Sec24 zinc finger
`XP_057767588.1`	Pfam	`PF04811`	Sec23_trunk	Domain	491	731	4.5e-79	266.1	Sec23/Sec24 trunk domain
`XP_057767588.1`	Pfam	`PF08033`	Sec23_BS	Domain	736	820	6.9e-27	94.6	Sec23/Sec24 beta-sandwich domain
`XP_057767588.1`	Pfam	`PF04815`	Sec23_helical	Domain	831	929	5.8e-24	84.6	Sec23/Sec24 helical domain
`XP_057767588.1`	Pfam	`PF00626`	Gelsolin	Domain	952	1022	8.3e-10	39.1	Gelsolin repeat
`XP_057767589.1`	Pfam	`PF04810`	zf-Sec23_Sec24	Domain	416	454	2e-16	60.4	Sec23/Sec24 zinc finger
`XP_057767589.1`	Pfam	`PF04811`	Sec23_trunk	Domain	491	731	4.5e-79	266.1	Sec23/Sec24 trunk domain
`XP_057767589.1`	Pfam	`PF08033`	Sec23_BS	Domain	736	820	6.9e-27	94.6	Sec23/Sec24 beta-sandwich domain
`XP_057767589.1`	Pfam	`PF04815`	Sec23_helical	Domain	831	929	5.8e-24	84.6	Sec23/Sec24 helical domain
`XP_057767589.1`	Pfam	`PF00626`	Gelsolin	Domain	952	1022	8.3e-10	39.1	Gelsolin repeat
`XP_057767590.1`	Pfam	`PF04810`	zf-Sec23_Sec24	Domain	416	454	2e-16	60.4	Sec23/Sec24 zinc finger
`XP_057767590.1`	Pfam	`PF04811`	Sec23_trunk	Domain	491	731	4.5e-79	266.1	Sec23/Sec24 trunk domain
`XP_057767590.1`	Pfam	`PF08033`	Sec23_BS	Domain	736	820	6.9e-27	94.6	Sec23/Sec24 beta-sandwich domain
`XP_057767590.1`	Pfam	`PF04815`	Sec23_helical	Domain	831	929	5.8e-24	84.6	Sec23/Sec24 helical domain
`XP_057767590.1`	Pfam	`PF00626`	Gelsolin	Domain	952	1022	8.3e-10	39.1	Gelsolin repeat
`XP_057767591.1`	Pfam	`PF04810`	zf-Sec23_Sec24	Domain	416	454	2e-16	60.4	Sec23/Sec24 zinc finger
`XP_057767591.1`	Pfam	`PF04811`	Sec23_trunk	Domain	491	731	4.5e-79	266.1	Sec23/Sec24 trunk domain
`XP_057767591.1`	Pfam	`PF08033`	Sec23_BS	Domain	736	820	6.9e-27	94.6	Sec23/Sec24 beta-sandwich domain
`XP_057767591.1`	Pfam	`PF04815`	Sec23_helical	Domain	831	929	5.8e-24	84.6	Sec23/Sec24 helical domain
`XP_057767591.1`	Pfam	`PF00626`	Gelsolin	Domain	952	1022	8.3e-10	39.1	Gelsolin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057911606.1
ATGTTTCTATTGCAAAAACCGAAAAAAAAAATGAAAAAAAAGGCAAAAAAGTAAATGAAAGCTGCCAATTTCAATAATTTTTTTTTATAACCGTAATATGTGAATTTTGCTTTGATCCTTCAGAAATTTACCAATTTTGCATTTTCTTTTCTCTCTATCTATCAATCTCGACTTCGATCCGTAACTATTATCTATCGATCTCAGCCAAAAACTGTATGCAATTTTACGCGCAACATTAAGTAAGATCGGAATCTGGTCGG...

XM_057911607.1
ATGTTTCTATTGCAAAAACCGAAAAAAAAAATGAAAAAAAAGGCAAAAAAGTAAATGAAAGCTGCCAATTTCAATAATTTTTTTTTATAACCGTAATATGTGAATTTTGCTTTGATCCTTCAGAAATTTACCAATTTTGCATTTTCTTTTCTCTCTATCTATCAATCTCGACTTCGATCCGTAACTATTATCTATCGATCTCAGCCAAAAACTGTATGCAATTTTACGCGCAACATTAAGATCGGAATCTGGTCGGAAAG...

CDS

6 records

下载 CDS FASTA

LOC130987902
ATGGCAGCTCCTGGGGGACCTAGGCCAGGGAATTTCCCCCCGAATTATAACCCGAATTCCATTGCTAATAATATGCAAAACCTACAAATTAATCAGCCTAATCAGCAGCAACCGAACAATGTTGGTGGTAGTGCCCCTAGACCTCCTCCGAATACAACTCCATTCGGTCAACAGGCTCCGGCTTTTGCTGGTAGCAGACCAGGCCCGCCTCCCCCTGGTGTATTTCCAAGGGCTCCGGTACCACCCAATGCTCCTGCTCA...

Protein

6 records

下载 Protein FASTA

XP_057767586.1
MAAPGGPRPGNFPPNYNPNSIANNMQNLQINQPNQQQPNNVGGSAPRPPPNTTPFGQQAPAFAGSRPGPPPPGVFPRAPVPPNAPAQTTLPPNMGSTRPTGPPPGSQPPPFASRPPPPGAMPSSVGGPVAPSPPALGPRPGSYPSSPLTSAPSTPSHASASGSISNGPPTFAPGMTQGGSPFPPAMGSMPRPLGGPPQPPAMLSSRPSSQPLQMRPTFGGPPTAVSSASGQPAPPFSGPPHNMMPPLGSSPFSAPNTGMH...

XP_057767587.1
MAAPGGPRPGNFPPNYNPNSIANNMQNLQINQPNQQQPNNVGGSAPRPPPNTTPFGQQAPAFAGSRPGPPPPGVFPRAPVPPNAPAQTTLPPNMGSTRPTGPPPGSQPPPFASRPPPPGAMPSSVGGPVAPSPPALGPRPGSYPSSPLTSAPSTPSHASASGSISNGPPTFAPGMTQGGSPFPPAMGSMPRPLGGPPQPPAMLSSRPSSQPLQMRPTFGGPPTAVSSASGQPAPPFSGPPHNMMPPLGSSPFSAPNTGMH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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