当前解析结果
SmilChr06G000377| 统一新 Gene ID | SmilChr06G000377 |
|---|---|
| 名称 | SmilChr06G000377 |
| 描述 | uncharacterized SmilChr06G000377 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 2930696 - 2938633 / - |
| NCBI Gene ID | LOC130987925 |
|---|---|
| GeneID | 130987925 |
| locus_tag | - |
| NCBI Name | LOC130987925 |
| 原始查询 | SmilChr06G000377 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Molecular chaperone Hsp40/DnaJ family protein [Source:NCBI gene (formerly Entrezgene);Acc:821051]; symbol=AT3G17830; hit=AT3G17830; species=arabidopsis; confidence=high |
| 产物 | Molecular chaperone Hsp40/DnaJ family protein [Source:NCBI gene (formerly Entrezgene);Acc:821051]; symbol=AT3G17830; hit=AT3G17830; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G17830 (AT3G17830)Molecular chaperone Hsp40/DnaJ family protein [Source:NCBI gene (formerly Entrezgene);Acc:821051] identity=50; qcov=0.866; evalue=4.66e-155; confidence=high |
| Rice | Os02g0804500 (OsDjA2)- identity=47.1; qcov=0.752; evalue=7.71e-131; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0009408 (response to heat); GO:0031072 (heat shock protein binding); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085) |
| KEGG | - |
| Pfam | PF00226 (DnaJ); PF00684 (DnaJ_CXXCXGXG); PF01556 (DnaJ_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987925 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057767616.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057767616.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057767616.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057767616.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767616.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:2931143 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C29 |
Chr6:2931143 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C29 |
Chr6:2931186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B33 |
Chr6:2931221 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B68,D1 |
Chr6:2931222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:2932509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,B40,C35,C61,C73 |
Chr6:2932544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:2932685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B135,B72,C5 |
Chr6:2935038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,B93,C28,C41 |
Chr6:2936422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr6:2938403 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:2938513 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C28,C41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767616.1PF00226
DnaJ 67-128 aa
PF01556
DnaJ_C 189-407 aa
PF00684
DnaJ_CXXCXGXG 216-280 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767616.1 |
Pfam | PF00226 |
DnaJ | Domain | 67 | 128 | 2.5e-26 | 92.3 | DnaJ domain |
XP_057767616.1 |
Pfam | PF01556 |
DnaJ_C | Domain | 189 | 407 | 1e-35 | 123.8 | DnaJ C terminal domain |
XP_057767616.1 |
Pfam | PF00684 |
DnaJ_CXXCXGXG | Domain | 216 | 280 | 1.7e-13 | 51.3 | DnaJ central domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。