当前解析结果
SmilChr06G000381| 统一新 Gene ID | SmilChr06G000381 |
|---|---|
| 名称 | SmilChr06G000381 |
| 描述 | potassium channel SKOR-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 3008390 - 3013696 / + |
| NCBI Gene ID | LOC130987929 |
|---|---|
| GeneID | 130987929 |
| locus_tag | - |
| NCBI Name | LOC130987929 |
| 原始查询 | SmilChr06G000381 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | potassium channel SKOR-like |
| 产物 | potassium channel SKOR-like |
| Arabidopsis | AT3G02850 (SKOR)STELAR K+ outward rectifier [Source:NCBI gene (formerly Entrezgene);Acc:821052] identity=61.1; qcov=0.93; evalue=0; confidence=high |
| Rice | Os06g0250600 (OsK5.2)- identity=61.1; qcov=0.924; evalue=0; confidence=high |
| GO | GO:0005249 (voltage-gated potassium channel activity); GO:0005515 (protein binding); GO:0006813 (potassium ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF00027 (cNMP_binding); PF00520 (Ion_trans); PF07885 (Ion_trans_2); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987929 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057767620.1 |
| 2 | Dendrite | Dendrite | 0.20000 | XP_057767622.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767620.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767620.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767620.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:3008552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr6:3008568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,B65,C80 |
Chr6:3008606 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:3008917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B18,B42,B43,B56,C63 |
Chr6:3008925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B18,B42,B43,B56,C63 |
Chr6:3009078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B27,B72,B98,C81 |
Chr6:3009339 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B113,B132,B16,B47,C17 |
Chr6:3009378 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,C63 |
Chr6:3009399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr6:3011931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr6:3012170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr6:3012179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,C41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767620.1PF00520
Ion_trans 60-308 aa
PF07885
Ion_trans_2 248-304 aa
PF00027
cNMP_binding 398-483 aa
PF00023
Ank 594-620 aa
PF12796
Ank_2 594-641 aa
PF13637
Ank_4 594-641 aa
PF13637
Ank_4 657-706 aa
PF12796
Ank_2 657-738 aa
PF13857
Ank_5 672-726 aa
PF00023
Ank 687-716 aa
XP_057767622.1PF00520
Ion_trans 60-308 aa
PF07885
Ion_trans_2 248-304 aa
PF00027
cNMP_binding 398-483 aa
PF12796
Ank_2 528-613 aa
PF13637
Ank_4 529-576 aa
PF13857
Ank_5 542-593 aa
PF13606
Ank_3 555-583 aa
PF00023
Ank 555-587 aa
PF13637
Ank_4 624-673 aa
PF12796
Ank_2 624-705 aa
PF13857
Ank_5 639-693 aa
PF00023
Ank 654-683 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767620.1 |
Pfam | PF00520 |
Ion_trans | Family | 60 | 308 | 8.2e-25 | 88.1 | Ion transport protein |
XP_057767620.1 |
Pfam | PF07885 |
Ion_trans_2 | Family | 248 | 304 | 1.1e-08 | 35.6 | Ion channel |
XP_057767620.1 |
Pfam | PF00027 |
cNMP_binding | Domain | 398 | 483 | 7.7e-12 | 45.7 | Cyclic nucleotide-binding domain |
XP_057767620.1 |
Pfam | PF00023 |
Ank | Repeat | 594 | 620 | 9.9e-18 | 64.0 | Ankyrin repeat |
XP_057767620.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 594 | 641 | 3e-20 | 73.3 | Ankyrin repeats (3 copies) |
XP_057767620.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 594 | 641 | 1.3e-23 | 83.2 | Ankyrin repeats (many copies) |
XP_057767620.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 657 | 706 | 1.3e-23 | 83.2 | Ankyrin repeats (many copies) |
XP_057767620.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 657 | 738 | 3e-20 | 73.3 | Ankyrin repeats (3 copies) |
XP_057767620.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 672 | 726 | 9.7e-14 | 52.1 | Ankyrin repeats (many copies) |
XP_057767620.1 |
Pfam | PF00023 |
Ank | Repeat | 687 | 716 | 9.9e-18 | 64.0 | Ankyrin repeat |
XP_057767622.1 |
Pfam | PF00520 |
Ion_trans | Family | 60 | 308 | 8.7e-25 | 88.0 | Ion transport protein |
XP_057767622.1 |
Pfam | PF07885 |
Ion_trans_2 | Family | 248 | 304 | 1.1e-08 | 35.6 | Ion channel |
XP_057767622.1 |
Pfam | PF00027 |
cNMP_binding | Domain | 398 | 483 | 7.3e-12 | 45.8 | Cyclic nucleotide-binding domain |
XP_057767622.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 528 | 613 | 7.8e-25 | 88.0 | Ankyrin repeats (3 copies) |
XP_057767622.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 529 | 576 | 2.2e-26 | 92.0 | Ankyrin repeats (many copies) |
XP_057767622.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 542 | 593 | 8.9e-19 | 68.1 | Ankyrin repeats (many copies) |
XP_057767622.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 555 | 583 | 1.8e-14 | 52.9 | Ankyrin repeat |
XP_057767622.1 |
Pfam | PF00023 |
Ank | Repeat | 555 | 587 | 2.2e-22 | 78.6 | Ankyrin repeat |
XP_057767622.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 624 | 673 | 2.2e-26 | 92.0 | Ankyrin repeats (many copies) |
XP_057767622.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 624 | 705 | 7.8e-25 | 88.0 | Ankyrin repeats (3 copies) |
XP_057767622.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 639 | 693 | 8.9e-19 | 68.1 | Ankyrin repeats (many copies) |
XP_057767622.1 |
Pfam | PF00023 |
Ank | Repeat | 654 | 683 | 2.2e-22 | 78.6 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。