当前解析结果
SmilChr06G000385| 统一新 Gene ID | SmilChr06G000385 |
|---|---|
| 名称 | SmilChr06G000385 |
| 描述 | uncharacterized SmilChr06G000385 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 3049259 - 3054046 / + |
| NCBI Gene ID | LOC130990054 |
|---|---|
| GeneID | 130990054 |
| locus_tag | - |
| NCBI Name | LOC130990054 |
| 原始查询 | SmilChr06G000385 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:827919]; symbol=AT4G02540; hit=AT4G02540; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:827919]; symbol=AT4G02540; hit=AT4G02540; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G02540 (AT4G02540)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:827919] identity=25; qcov=0.587; evalue=6.84e-31; confidence=low |
| Rice | Os07g0610200- identity=26.2; qcov=0.259; evalue=3.01e-10; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF03107 (C1_2); PF03108 (DBD_Tnp_Mut); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990054 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057770235.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057770235.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057770235.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770235.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:3049324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B4,B7 |
Chr6:3049331 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B131,B4,B7,C87 |
Chr6:3049354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B21,C50,C69,C7,C9 |
Chr6:3049357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,C69,C87 |
Chr6:3049371 |
A |
ATC |
2bp_insertion | frameshift_variant | 9 | A1,A3,B27,B39,B64,B66,B89,C44,C46 |
Chr6:3049373 |
CGG |
C |
2bp_deletion | frameshift_variant | 9 | A1,A3,B27,B39,B64,B66,B89,C44,C46 |
Chr6:3049399 |
GA |
G |
1bp_deletion | frameshift_variant | 15 | B135,B30,B38,B90,B91,B92,B94,C10,C36,C4,C60,C63,C72,D6,D9 |
Chr6:3049407 |
G |
A |
EMS_canonical_SNV | stop_gained | 17 | A1,A9,B105,B120,B123,B140,B39,B54,B64,B66,B89,C26,C30,C44,C51,C69,C78 |
Chr6:3049429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr6:3049446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B125,B95 |
Chr6:3049448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,C31 |
Chr6:3049462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770235.1PF03107
C1_2 81-128 aa
PF03107
C1_2 145-189 aa
PF03107
C1_2 202-251 aa
PF03107
C1_2 498-544 aa
PF26130
PB1-like 561-656 aa
PF03108
DBD_Tnp_Mut 831-894 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770235.1 |
Pfam | PF03107 |
C1_2 | Domain | 81 | 128 | 9.4e-38 | 129.0 | C1 domain |
XP_057770235.1 |
Pfam | PF03107 |
C1_2 | Domain | 145 | 189 | 9.4e-38 | 129.0 | C1 domain |
XP_057770235.1 |
Pfam | PF03107 |
C1_2 | Domain | 202 | 251 | 9.4e-38 | 129.0 | C1 domain |
XP_057770235.1 |
Pfam | PF03107 |
C1_2 | Domain | 498 | 544 | 9.4e-38 | 129.0 | C1 domain |
XP_057770235.1 |
Pfam | PF26130 |
PB1-like | Domain | 561 | 656 | 2.1e-17 | 64.0 | PB1-like domain |
XP_057770235.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 831 | 894 | 1.9e-09 | 37.8 | MuDR family transposase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。