Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000389`

染色体: Chr06 坐标: 3081264-3086517 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000389`
名称	SmilChr06G000389
描述	putative late blight resistance protein homolog R1B-12
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3081264 - 3086517 / `-`

ID 对照

NCBI Gene ID	`LOC130987935`
GeneID	`130987935`
locus_tag	`-`
NCBI Name	`LOC130987935`
原始查询	`SmilChr06G000389`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-12
产物	putative late blight resistance protein homolog R1B-12
Arabidopsis	`AT1G53350` (AT1G53350) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=23.6; qcov=0.95; evalue=3.24e-38; confidence=weak
Rice	`Os10g0183000` (OsLSR) - identity=23.9; qcov=0.827; evalue=2.1e-38; confidence=weak
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC)
InterPro	-
eggNOG	-
NR	GeneID:130987935

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057767626.1`
2	Nucleus	细胞核	0.00000	`XP_057767626.1`
3	Chromosome	染色体	0.00000	`XP_057767626.1`
4	Centromere	着丝粒	0.00000	`XP_057767626.1`
5	Chromatin	染色质	0.00000	`XP_057767626.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3083599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B98,C47,C8
`Chr6:3083627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B72,B98,C47,C8
`Chr6:3083668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B72,B98,C47
`Chr6:3083703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,B72
`Chr6:3083736`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	C24,C42,C72
`Chr6:3083736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C24,C42,C72
`Chr6:3083792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,D6
`Chr6:3083832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,D6
`Chr6:3083882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr6:3083904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B73,B85,C58
`Chr6:3083913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B73,C58
`Chr6:3083967`	`A`	`AGG`	2bp_insertion	frameshift_variant	12	A20,B104,B129,B130,B132,B134,B28,C15,C40,C68,D5,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767626.1

915 aa

458

915

NB-ARC

PF00931 NB-ARC 204-353 aa

XP_057767627.1

915 aa

458

915

NB-ARC

PF00931 NB-ARC 204-353 aa

XP_057767628.1

915 aa

458

915

NB-ARC

PF00931 NB-ARC 204-353 aa

XP_057767629.1

915 aa

458

915

NB-ARC

PF00931 NB-ARC 204-353 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767626.1`	Pfam	`PF00931`	NB-ARC	Domain	204	353	7.7e-30	104.4	NB-ARC domain
`XP_057767627.1`	Pfam	`PF00931`	NB-ARC	Domain	204	353	7.7e-30	104.4	NB-ARC domain
`XP_057767628.1`	Pfam	`PF00931`	NB-ARC	Domain	204	353	7.7e-30	104.4	NB-ARC domain
`XP_057767629.1`	Pfam	`PF00931`	NB-ARC	Domain	204	353	7.7e-30	104.4	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057911644.1
GCTGGTCTACACATTTTTTCCGACAATCGGTTGTTCAAACAAATTTATTTTATCTGTTGTGTCGTTTGTCTTATACGATGATCGGTTGTTTGAGTCAAGAATAAACGTAGTCTGAGACGGTAGTGCACGACTTTCAGATCTTGAAGAAACACACTGACACTCCACATTCCCGCCGCCGCCGCCGTCGCAACACAACCAGAGAGGAATGACGGCATACGGTGCAGTGAAATCTCTGAGGAATACAATTGATTATATTCTCC...

XM_057911646.1
GCTGGTCTACACATTTTTTCCGACAATCGGTTGTTCAAACAAATTTATTTTATCTGTTGTGTCGTTTGTCTTATACGATGATCGGTTGTTTGAGTCAAGAATAAACGTAGTCTGAGACGGTAGTGCACGACTTTCAGATCTTGAAGAAACACACTGACACTCCACATTCCCGCCGCCGCCGCCGTCGCAACACAACCAGAGAGGAATGACGGCATACGGTGCAGTGAAATCTCTGAGGAATACAATTGATTATATTCTCC...

CDS

4 records

下载 CDS FASTA

LOC130987935
ATGACGGCATACGGTGCAGTGAAATCTCTGAGGAATACAATTGATTATATTCTCCATTCTTCTCATTTTAGGCTTGTTCCCCACTCTCGAGATATCATAAAATTGGCCTACAAGGAGTTGCAGCCCTTGCAAGAAATGCTGGAACGATTGGACAGCACAAGGACGAGCAAGAGCAGAAAGGAGGTGAATGCTTTGGATGGAAGAATCAAAGAGATACTATTGGAATTCGAAGACTTATTGGAATCCCTTGTCTACCAACA...

Protein

4 records

下载 Protein FASTA

XP_057767626.1
MTAYGAVKSLRNTIDYILHSSHFRLVPHSRDIIKLAYKELQPLQEMLERLDSTRTSKSRKEVNALDGRIKEILLEFEDLLESLVYQQIHSQIRADQLYEEMKDRVCKFEALDYFNPKRLLHYAKHKGRKSYMPRFSIDLQFLQHDVPSFIQRLKDMKEEYVYEVDNMPEDDDEFSITRTKSKMIGLSDQIQQIKVDIMYIHHGRNNYITLVGTAGVGKTALAEAVFEDPEITSHFDHRAWVTVGRKSQLDQVLQGILAQM...

XP_057767627.1
MTAYGAVKSLRNTIDYILHSSHFRLVPHSRDIIKLAYKELQPLQEMLERLDSTRTSKSRKEVNALDGRIKEILLEFEDLLESLVYQQIHSQIRADQLYEEMKDRVCKFEALDYFNPKRLLHYAKHKGRKSYMPRFSIDLQFLQHDVPSFIQRLKDMKEEYVYEVDNMPEDDDEFSITRTKSKMIGLSDQIQQIKVDIMYIHHGRNNYITLVGTAGVGKTALAEAVFEDPEITSHFDHRAWVTVGRKSQLDQVLQGILAQM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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