Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000413`

染色体: Chr06 坐标: 3392981-3398408 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000413`
名称	SmilChr06G000413
描述	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3392981 - 3398408 / `-`

ID 对照

NCBI Gene ID	`LOC130987963`
GeneID	`130987963`
locus_tag	`-`
NCBI Name	`LOC130987963`
原始查询	`SmilChr06G000413`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic
产物	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B%2C chloroplastic
Arabidopsis	`AT5G50920` (CLPC1) CLPC homologue 1 [Source:NCBI gene (formerly Entrezgene);Acc:835165] identity=89.5; qcov=0.987; evalue=0; confidence=high
Rice	`Os12g0230100` (CLPC2) - identity=85.7; qcov=0.988; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0034605 (cellular response to heat)
KEGG	-
Pfam	PF00004 (AAA); PF00158 (Sigma54_activat); PF02151 (UVR); PF02861 (Clp_N); PF07724 (AAA_2); PF07728 (AAA_5); PF10431 (ClpB_D2-small); PF17871 (AAA_lid_9)
InterPro	-
eggNOG	-
NR	GeneID:130987963

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057767676.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057767676.1`
3	Nucleus	细胞核	0.00000	`XP_057767676.1`
4	Chromosome	染色体	0.00000	`XP_057767676.1`
5	Centromere	着丝粒	0.00000	`XP_057767676.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3393512`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	A23,B105,B32,B79,C28,C36,C60
`Chr6:3393527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,C56,D8
`Chr6:3393595`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B132
`Chr6:3393595`	`TC`	`T`	1bp_deletion	CDS_variant	1	B132
`Chr6:3393645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B52,B86
`Chr6:3393663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B61,C13
`Chr6:3393711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B61,C13
`Chr6:3394056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,A9,B135,C10,C73
`Chr6:3394185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:3394203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B84
`Chr6:3394215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr6:3394479`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B35,B82,C85,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767676.1

925 aa

462

925

Clp_N

AAA

AAA_lid_9

UVR

Sigma54_activat

AAA_2

AAA_5

AAA

ClpB_D2-small

PF02861 Clp_N 95-217 aa PF02861 Clp_N 171-241 aa PF00004 AAA 298-410 aa PF17871 AAA_lid_9 437-537 aa PF02151 UVR 510-545 aa PF00158 Sigma54_activat 633-741 aa PF07724 AAA_2 635-809 aa PF07728 AAA_5 640-761 aa PF00004 AAA 641-760 aa PF10431 ClpB_D2-small 816-896 aa

XP_057767677.1

925 aa

462

925

Clp_N

AAA

AAA_lid_9

UVR

Sigma54_activat

AAA_2

AAA_5

AAA

ClpB_D2-small

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767676.1`	Pfam	`PF02861`	Clp_N	Family	95	217	2.4e-53	180.4	Clp repeat (R) N-terminal domain
`XP_057767676.1`	Pfam	`PF02861`	Clp_N	Family	171	241	2.4e-53	180.4	Clp repeat (R) N-terminal domain
`XP_057767676.1`	Pfam	`PF00004`	AAA	Domain	298	410	1.6e-24	87.5	ATPase family associated with various cellular activities (AAA)
`XP_057767676.1`	Pfam	`PF17871`	AAA_lid_9	Domain	437	537	5.1e-35	120.3	AAA lid domain
`XP_057767676.1`	Pfam	`PF02151`	UVR	Family	510	545	1.8e-07	31.4	UvrB/uvrC motif
`XP_057767676.1`	Pfam	`PF00158`	Sigma54_activat	Domain	633	741	3.8e-09	37.2	Sigma-54 interaction domain
`XP_057767676.1`	Pfam	`PF07724`	AAA_2	Domain	635	809	3.2e-71	239.5	AAA domain (Cdc48 subfamily)
`XP_057767676.1`	Pfam	`PF07728`	AAA_5	Domain	640	761	1.6e-19	71.0	AAA domain (dynein-related subfamily)
`XP_057767676.1`	Pfam	`PF00004`	AAA	Domain	641	760	1.6e-24	87.5	ATPase family associated with various cellular activities (AAA)
`XP_057767676.1`	Pfam	`PF10431`	ClpB_D2-small	Domain	816	896	3.5e-25	88.5	C-terminal, D2-small domain, of ClpB protein
`XP_057767677.1`	Pfam	`PF02861`	Clp_N	Family	95	217	2.4e-53	180.4	Clp repeat (R) N-terminal domain
`XP_057767677.1`	Pfam	`PF02861`	Clp_N	Family	171	241	2.4e-53	180.4	Clp repeat (R) N-terminal domain
`XP_057767677.1`	Pfam	`PF00004`	AAA	Domain	298	410	1.6e-24	87.5	ATPase family associated with various cellular activities (AAA)
`XP_057767677.1`	Pfam	`PF17871`	AAA_lid_9	Domain	437	537	5.1e-35	120.3	AAA lid domain
`XP_057767677.1`	Pfam	`PF02151`	UVR	Family	510	545	1.8e-07	31.4	UvrB/uvrC motif
`XP_057767677.1`	Pfam	`PF00158`	Sigma54_activat	Domain	633	741	3.8e-09	37.2	Sigma-54 interaction domain
`XP_057767677.1`	Pfam	`PF07724`	AAA_2	Domain	635	809	3.2e-71	239.5	AAA domain (Cdc48 subfamily)
`XP_057767677.1`	Pfam	`PF07728`	AAA_5	Domain	640	761	1.6e-19	71.0	AAA domain (dynein-related subfamily)
`XP_057767677.1`	Pfam	`PF00004`	AAA	Domain	641	760	1.6e-24	87.5	ATPase family associated with various cellular activities (AAA)
`XP_057767677.1`	Pfam	`PF10431`	ClpB_D2-small	Domain	816	896	3.5e-25	88.5	C-terminal, D2-small domain, of ClpB protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911693.1
TAGCGTATAAGAAAGCAGAAGCGTAAAATCAGTAAAATAAGAAAATAGAAAAAAAATCAAAGAGGAGAGAGAGAGGGATAGAGAGAGAGGCTATTATCGATTTATCATCCACATTTATCTATATATCTCTTGCATATCTGCATTTGAGCTCGTGAAATTCCGGCCGACTAAATTTAGGGTGCCTCTTCTTTCTCTCTCTTGACAACGGAAGGGACCCTTTTCATACCGTATTTATCAAATTAATCCTCTCTTTTTTTTTT...

XM_057911694.1
TATAAGAAAGCAGAAGCGTAAAATCAGTAAAATAAGAAAATAGAAAAAAAATCAAAGAGGAGAGAGAGAGGGATAGAGAGAGAGGCTATTATCGATTTATCATCCACATTTATCTATATATCTCTTGCATATCTGCATTTGAGCTCGTGAAATTCCGGCCGACTAAATTTAGGTCCTTTGGAGGTAGACATGGCGCGTGTCTTAGTTCAATCAACCAATTTTCCATCTTCAGTTGGTTTGGTAAATAATGGGCAGTTTGA...

CDS

2 records

下载 CDS FASTA

LOC130987963
ATGGCGCGTGTCTTAGTTCAATCAACCAATTTTCCATCTTCAGTTGGTTTGGTAAATAATGGGCAGTTTGAGGGTTCGAGCAAAAACAAAAAAGCATCTACAATGCTTTGCTGTACAAAGTCAGCTCCTGTGAGAGTGACCAGTTACTCGGGGCTCCGAGGAGCTAATGCCTTGGACATGTTGGTGAGGAAAAGTGGCCAGACACTCCAATCGAAGGTTGCGTCAGCCACCTTTGGCAAGCGGGGAAAAAAACAACGAAT...

Protein

2 records

下载 Protein FASTA

XP_057767676.1
MARVLVQSTNFPSSVGLVNNGQFEGSSKNKKASTMLCCTKSAPVRVTSYSGLRGANALDMLVRKSGQTLQSKVASATFGKRGKKQRMVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESAEAVGAGVGGGSSGNKMPTLEEYG...

XP_057767677.1
MARVLVQSTNFPSSVGLVNNGQFEGSSKNKKASTMLCCTKSAPVRVTSYSGLRGANALDMLVRKSGQTLQSKVASATFGKRGKKQRMVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESAEAVGAGVGGGSSGNKMPTLEEYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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