当前解析结果
SmilChr06G000417| 统一新 Gene ID | SmilChr06G000417 |
|---|---|
| 名称 | SmilChr06G000417 |
| 描述 | uncharacterized SmilChr06G000417 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 3459757 - 3463294 / - |
| NCBI Gene ID | LOC130987968 |
|---|---|
| GeneID | 130987968 |
| locus_tag | - |
| NCBI Name | LOC130987968 |
| 原始查询 | SmilChr06G000417 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817920]; symbol=AT2G33550; hit=AT2G33550; species=arabidopsis; confidence=weak |
| 产物 | Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817920]; symbol=AT2G33550; hit=AT2G33550; species=arabidopsis; confidence=weak |
| Arabidopsis | AT2G33550 (AT2G33550)Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817920] identity=49.1; qcov=0.191; evalue=1.26e-07; confidence=weak |
| Rice | Os04g0397500- identity=38.3; qcov=0.208; evalue=1.03e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987968 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767684.1 |
| 2 | Chromosome | 染色体 | 1.00000 | XP_057767684.1 |
| 3 | Nucleoplasm | 核质 | 1.00000 | XP_057767684.1 |
| 4 | Nuclear body | 核内小体 | 0.60000 | XP_057767684.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767684.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:3459922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B48 |
Chr6:3460012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,A4,B31,B8,C3 |
Chr6:3460023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B53,C29,C34,D11 |
Chr6:3460054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:3460084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:3460737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr6:3461869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,C87 |
Chr6:3461873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,C87,D11 |
Chr6:3461911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C87 |
Chr6:3461912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C87 |
Chr6:3462402 |
CTG |
C |
2bp_deletion | frameshift_variant | 17 | B105,B109,B11,B59,B60,B81,B99,C13,C4,C43,C50,C61,C72,C80,C81,C87,D8 |
Chr6:3462582 |
TG |
T |
1bp_deletion | frameshift_variant | 18 | A2,B109,B34,B56,B59,B65,B70,B81,C10,C48,C50,C51,C61,C72,C74,D11,D8,D9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。