Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000425`

染色体: Chr06 坐标: 3500830-3503279 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000425`
名称	SmilChr06G000425
描述	magnesium protoporphyrin IX methyltransferase, chloroplastic
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3500830 - 3503279 / `+`

ID 对照

NCBI Gene ID	`LOC130987976`
GeneID	`130987976`
locus_tag	`-`
NCBI Name	`LOC130987976`
原始查询	`SmilChr06G000425`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	magnesium protoporphyrin IX methyltransferase, chloroplastic
产物	magnesium protoporphyrin IX methyltransferase%2C chloroplastic
Arabidopsis	`AT4G25080` (CHLM) magnesium-protoporphyrin IX methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:828611] identity=74.6; qcov=0.797; evalue=3.96e-161; confidence=high
Rice	`Os06g0132400` (ChlM) - identity=67; qcov=0.278; evalue=5.71e-49; confidence=weak
GO	GO:0015995 (chlorophyll biosynthetic process); GO:0046406 (magnesium protoporphyrin IX methyltransferase activity)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF07109 (Mg-por_mtran_C); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:130987976

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057767692.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057767692.1`
3	Chloroplast stroma	叶绿体基质	0.60000	`XP_057767692.1`
4	Chloroplast membrane	叶绿体膜	0.40000	`XP_057767692.1`
5	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057767692.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3500979`	`C`	`CT`	1bp_insertion	frameshift_variant	51	A1,A15,A16,A19,A24,A8,B10,B102,B111,B113,B118,B12,B127,B130,B132,B137,B14,B15,B20,B26,B36,B47,B56,B61,B63,B64,B66,B72,B73,B77,B86,B87,B88,B96,B97,C14,C19,C26,C41,C47,C5,C56,C63,C64,C65,C66,C75,C78,C85,D2,D9
`Chr6:3501004`	`T`	`TA`	1bp_insertion	frameshift_variant	67	A14,A15,A19,A21,A23,A9,B10,B100,B101,B103,B105,B107,B117,B123,B126,B132,B135,B139,B17,B25,B27,B32,B37,B43,B50,B52,B57,B58,B61,B62,B63,B66,B74,B76,B78,B83,B86,B90,B92,B95,B97,B98,B99,C10,C15,C18,C20,C23,C28,C32,C35,C39,C4,C40,C49,C55,C57,C59,C61,C68,C73,C81,C82,C85,C9,D11,D5
`Chr6:3501016`	`A`	`AAG`	2bp_insertion	frameshift_variant	69	A22,A24,A9,B100,B101,B103,B105,B107,B110,B115,B117,B120,B123,B125,B126,B131,B132,B135,B139,B17,B23,B27,B32,B39,B43,B48,B50,B52,B57,B58,B61,B62,B67,B68,B71,B74,B81,B83,B85,B86,B93,B95,B97,B98,C10,C18,C2,C20,C28,C32,C35,C39,C4,C40,C45,C47,C49,C52,C55,C57,C59,C68,C72,C73,C75,C81,C85,C9,D3
`Chr6:3501044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr6:3501092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,B76
`Chr6:3501104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr6:3501310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr6:3501317`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr6:3501319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr6:3502723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B45,B9,C75,C9
`Chr6:3502764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B45,B9,C75,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767692.1

370 aa

185

370

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_11

Methyltransf_12

Mg-por_mtran_C

PF13489 Methyltransf_23 193-350 aa PF13847 Methyltransf_31 195-282 aa PF13649 Methyltransf_25 198-295 aa PF08241 Methyltransf_11 200-284 aa PF08242 Methyltransf_12 200-295 aa PF07109 Mg-por_mtran_C 273-368 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767692.1`	Pfam	`PF13489`	Methyltransf_23	Domain	193	350	8.4e-11	42.6	Methyltransferase domain
`XP_057767692.1`	Pfam	`PF13847`	Methyltransf_31	Domain	195	282	2e-08	34.9	Methyltransferase domain
`XP_057767692.1`	Pfam	`PF13649`	Methyltransf_25	Domain	198	295	1.1e-11	45.9	Methyltransferase domain
`XP_057767692.1`	Pfam	`PF08241`	Methyltransf_11	Domain	200	284	6.4e-09	37.1	Methyltransferase domain
`XP_057767692.1`	Pfam	`PF08242`	Methyltransf_12	Domain	200	295	2.7e-09	38.3	Methyltransferase domain
`XP_057767692.1`	Pfam	`PF07109`	Mg-por_mtran_C	Family	273	368	9.6e-38	129.2	Magnesium-protoporphyrin IX methyltransferase C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911709.1
AATTGAAGCAACTATAAATATAACTATATAAAGGTAGGAGAAATTGTGTTGAGACATGAAGGGGCCCCACAGAAAGCCATGTCGGCGCATTCTATCCACACGCCGGAATAGTCGGGATTACATTATCCAAACTGCCACACTCCCGCCGTCTCAAACGGCAACAACTACTGCTCTTAAAAAAAAAGAAAAAAAGAAAAAAAGAAGCTCAAAAATGGCGTTTTCCTCCTTCTTATACTCCCCAATCCACTTCGCCGTCCCCA...

CDS

1 records

下载 CDS FASTA

LOC130987976
ATGAAGGGGCCCCACAGAAAGCCATGTCGGCGCATTCTATCCACACGCCGGAATAGTCGGGATTACATTATCCAAACTGCCACACTCCCGCCGTCTCAAACGGCAACAACTACTGCTCTTAAAAAAAAAGAAAAAAAGAAAAAAAGAAGCTCAAAAATGGCGTTTTCCTCCTTCTTATACTCCCCAATCCACTTCGCCGTCCCCAATCCTCTCTCCCACCTCCCCCGCCGCCGCCACCTCTCGGTAACCGCCGCCGTCCC...

Protein

1 records

下载 Protein FASTA

XP_057767692.1
MKGPHRKPCRRILSTRRNSRDYIIQTATLPPSQTATTTALKKKEKKKKRSSKMAFSSFLYSPIHFAVPNPLSHLPRRRHLSVTAAVPPISDVAAVADALDGTTIAVIGGGSVAALAAVLSLSDPEKRRQMQAEEVGGGDKEVVREYFNNDGFQRWRRIYGDGDDVNKVQRDIRLGHSMTVENVMKMLLDEGPLAGLTVCDAGCGTGCLSIPLAREGAVVAASDISAAMVAEAEKQARNELLKGEDKLPPGVVLPRFEVSD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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