Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000428`

染色体: Chr06 坐标: 3509111-3519404 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000428`
名称	SmilChr06G000428
描述	transcription initiation factor TFIID subunit 5
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3509111 - 3519404 / `+`

ID 对照

NCBI Gene ID	`LOC130987979`
GeneID	`130987979`
locus_tag	`-`
NCBI Name	`LOC130987979`
原始查询	`SmilChr06G000428`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription initiation factor TFIID subunit 5
产物	transcription initiation factor TFIID subunit 5
Arabidopsis	`AT5G25150` (TAF5) TBP-associated factor 5 [Source:NCBI gene (formerly Entrezgene);Acc:832586] identity=70.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0649500` (OsWD40-132) - identity=69.8; qcov=1.01; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005669 (transcription factor TFIID complex); GO:0006367 (transcription initiation at RNA polymerase II promoter); GO:0016251 (RNA polymerase II general transcription initiation factor activity)
KEGG	smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF04494 (TFIID_NTD2)
InterPro	-
eggNOG	-
NR	GeneID:130987979

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767695.1`
2	Cytoplasm	细胞质	0.40000	`XP_057767695.1`
3	Nucleoplasm	核质	0.20000	`XP_057767696.1`
4	Chromosome	染色体	0.00000	`XP_057767695.1`
5	Centromere	着丝粒	0.00000	`XP_057767695.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3509315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,D8
`Chr6:3509316`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr6:3509357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B21,C50
`Chr6:3509361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B21,C50
`Chr6:3509374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:3509390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B21,C47,C50
`Chr6:3509396`	`C`	`T`	EMS_canonical_SNV	stop_gained	31	A16,A2,A20,A21,A23,A7,B101,B119,B122,B123,B136,B139,B16,B30,B36,B59,B64,B67,B73,B75,B79,B8,B82,B92,C21,C33,C40,C7,C78,C9,D8
`Chr6:3509410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr6:3510817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B35,B82,C85,D7
`Chr6:3510871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B18,C70
`Chr6:3511968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B28,C12
`Chr6:3512851`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B18,B38,B39,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767695.1

669 aa

334

669

TFIID_NTD2

WD40

PF04494 TFIID_NTD2 61-188 aa PF00400 WD40 344-377 aa PF00400 WD40 411-445 aa PF00400 WD40 454-487 aa PF00400 WD40 492-529 aa PF00400 WD40 533-571 aa PF00400 WD40 575-613 aa

XP_057767696.1

661 aa

330

661

TFIID_NTD2

WD40

PF04494 TFIID_NTD2 61-188 aa PF00400 WD40 344-377 aa PF00400 WD40 411-445 aa PF00400 WD40 454-487 aa PF00400 WD40 492-529 aa PF00400 WD40 533-571 aa PF00400 WD40 575-613 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767695.1`	Pfam	`PF04494`	TFIID_NTD2	Family	61	188	2e-43	148.6	WD40 associated region in TFIID subunit, NTD2 domain
`XP_057767695.1`	Pfam	`PF00400`	WD40	Repeat	344	377	1.9e-63	208.9	WD domain, G-beta repeat
`XP_057767695.1`	Pfam	`PF00400`	WD40	Repeat	411	445	1.9e-63	208.9	WD domain, G-beta repeat
`XP_057767695.1`	Pfam	`PF00400`	WD40	Repeat	454	487	1.9e-63	208.9	WD domain, G-beta repeat
`XP_057767695.1`	Pfam	`PF00400`	WD40	Repeat	492	529	1.9e-63	208.9	WD domain, G-beta repeat
`XP_057767695.1`	Pfam	`PF00400`	WD40	Repeat	533	571	1.9e-63	208.9	WD domain, G-beta repeat
`XP_057767695.1`	Pfam	`PF00400`	WD40	Repeat	575	613	1.9e-63	208.9	WD domain, G-beta repeat
`XP_057767696.1`	Pfam	`PF04494`	TFIID_NTD2	Family	61	188	1.9e-43	148.6	WD40 associated region in TFIID subunit, NTD2 domain
`XP_057767696.1`	Pfam	`PF00400`	WD40	Repeat	344	377	1.7e-63	209.1	WD domain, G-beta repeat
`XP_057767696.1`	Pfam	`PF00400`	WD40	Repeat	411	445	1.7e-63	209.1	WD domain, G-beta repeat
`XP_057767696.1`	Pfam	`PF00400`	WD40	Repeat	454	487	1.7e-63	209.1	WD domain, G-beta repeat
`XP_057767696.1`	Pfam	`PF00400`	WD40	Repeat	492	529	1.7e-63	209.1	WD domain, G-beta repeat
`XP_057767696.1`	Pfam	`PF00400`	WD40	Repeat	533	571	1.7e-63	209.1	WD domain, G-beta repeat
`XP_057767696.1`	Pfam	`PF00400`	WD40	Repeat	575	613	1.7e-63	209.1	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911712.1
TAAATAAATAAATAGAGAGAGGAAACGATTCCCTCCTCTCATGTTTTACACTTGAAAAATTTGGGGTTTTAGGGTTCTCTACCCATAACAGATTTACAGTTAGCACGACACTGTGAGAGAGGGAGAGAGAGAATGGACCAAGAAGAGATCGATAAAGTGGTTCTGGCGTACTTGGACAAGAGGGGTTTCAAGCAAGCTGGCCTCGCTCTTCAGCAAGAGAAGCAGCAACACGGCAAAGGCAGCAACGCCTCCTCCACTGC...

XM_057911713.1
TAAATAAATAAATAGAGAGAGGAAACGATTCCCTCCTCTCATGTTTTACACTTGAAAAATTTGGGGTTTTAGGGTTCTCTACCCATAACAGATTTACAGTTAGCACGACACTGTGAGAGAGGGAGAGAGAGAATGGACCAAGAAGAGATCGATAAAGTGGTTCTGGCGTACTTGGACAAGAGGGGTTTCAAGCAAGCTGGCCTCGCTCTTCAGCAAGAGAAGCAGCAACACGGCAAAGGCAGCAACGCCTCCTCCACTGC...

CDS

2 records

下载 CDS FASTA

LOC130987979
ATGGACCAAGAAGAGATCGATAAAGTGGTTCTGGCGTACTTGGACAAGAGGGGTTTCAAGCAAGCTGGCCTCGCTCTTCAGCAAGAGAAGCAGCAACACGGCAAAGGCAGCAACGCCTCCTCCACTGCACAGATTGATCCTGATATTGCTAAACAAATCCTCTCTTTCGCTGAAGTGGATGGTCCTGCTCAGTACCAAGAAGGTTATAGCAAGCTACGGTCATGGGCTTATAGTTCTCTGGATCAGTACCAGCACGAGTT...

Protein

2 records

下载 Protein FASTA

XP_057767695.1
MDQEEIDKVVLAYLDKRGFKQAGLALQQEKQQHGKGSNASSTAQIDPDIAKQILSFAEVDGPAQYQEGYSKLRSWAYSSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQEARSFFNSFRGDHEVMHTRDLQKLEGVLSPSHLEEMEFAHSLRQSKVGIKICQYSYDLLLQYLHKSQSITMLGVVNEHINFQVSPGQPNSIADDAEYVTFFGSDQDAANLINQKEIHWGLLEDSLEERLEKTGAPNMDSEKADGEAREGEL...

XP_057767696.1
MDQEEIDKVVLAYLDKRGFKQAGLALQQEKQQHGKGSNASSTAQIDPDIAKQILSFAEVDGPAQYQEGYSKLRSWAYSSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQEARSFFNSFRGDHEVMHTRDLQKLEGVLSPSHLEEMEFAHSLRQSKVGIKICQYSYDLLLQYLHKSQSITMLGVVNEHINFQVSPGQPNSIADDAEYVTFFGSDQDAANLINQKEIHWGLLEDSLEERLEKTGAPNMDSEKADGEAREGEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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