当前解析结果
SmilChr06G000455| 统一新 Gene ID | SmilChr06G000455 |
|---|---|
| 名称 | SmilChr06G000455 |
| 描述 | uncharacterized SmilChr06G000455 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 3677323 - 3680128 / - |
| NCBI Gene ID | LOC130988005 |
|---|---|
| GeneID | 130988005 |
| locus_tag | - |
| NCBI Name | LOC130988005 |
| 原始查询 | SmilChr06G000455 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0106700; species=rice; confidence=low |
| 产物 | hit=Os02g0106700; species=rice; confidence=low |
| Arabidopsis | AT5G17290 (APG5)autophagy protein Apg5 family [Source:NCBI gene (formerly Entrezgene);Acc:831594] identity=71.4; qcov=0.252; evalue=2.99e-07; confidence=weak |
| Rice | Os02g0106700- identity=53.2; qcov=0.423; evalue=1.59e-10; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988005 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767724.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057767724.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057767724.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767724.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767724.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:3678486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,C28,C76,D5 |
Chr6:3678492 |
G |
GAA |
2bp_insertion | frameshift_variant | 1 | C28 |
Chr6:3678492 |
G |
GAA |
2bp_insertion | CDS_variant | 1 | C28 |
Chr6:3678493 |
TGC |
T |
2bp_deletion | frameshift_variant | 1 | C28 |
Chr6:3678493 |
TGC |
T |
2bp_deletion | CDS_variant | 1 | C28 |
Chr6:3678502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,B130,C71,C86 |
Chr6:3679037 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | B64,B90,B99 |
Chr6:3679037 |
A |
AT |
1bp_insertion | CDS_variant | 3 | B64,B90,B99 |
Chr6:3679042 |
CA |
C |
1bp_deletion | frameshift_variant | 7 | A1,B105,B64,B90,B99,C21,C78 |
Chr6:3679069 |
A |
AT |
1bp_insertion | frameshift_variant | 5 | A1,B105,B64,C21,C78 |
Chr6:3679069 |
A |
AT |
1bp_insertion | CDS_variant | 5 | A1,B105,B64,C21,C78 |
Chr6:3679078 |
AGT |
A |
2bp_deletion | frameshift_variant | 4 | A1,B64,C21,C78 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
50 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。