Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000461`

染色体: Chr06 坐标: 3730865-3732591 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000461`
名称	SmilChr06G000461
描述	E3 ubiquitin-protein ligase RSL1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3730865 - 3732591 / `+`

ID 对照

NCBI Gene ID	`LOC130990059`
GeneID	`130990059`
locus_tag	`-`
NCBI Name	`LOC130990059`
原始查询	`SmilChr06G000461`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase RSL1-like
产物	E3 ubiquitin-protein ligase RSL1-like
Arabidopsis	`AT3G14250` (AT3G14250) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820645] identity=33.5; qcov=0.918; evalue=1.98e-62; confidence=low
Rice	`Os08g0451800` - identity=45.8; qcov=0.925; evalue=1.64e-75; confidence=high
GO	GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF01485 (IBR); PF22191 (IBR_1)
InterPro	-
eggNOG	-
NR	GeneID:130990059

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057770240.1`
2	Chromosome	染色体	0.00000	`XP_057770240.1`
3	Centromere	着丝粒	0.00000	`XP_057770240.1`
4	Chromatin	染色质	0.00000	`XP_057770240.1`
5	Telomere	端粒	0.00000	`XP_057770240.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3731108`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B62
`Chr6:3731108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr6:3731142`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B82
`Chr6:3731142`	`AG`	`A`	1bp_deletion	CDS_variant	1	B82
`Chr6:3731149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr6:3731188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B77,B78,C42
`Chr6:3731197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:3731254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B62,B78,C83
`Chr6:3731273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:3731338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B17,B63,C68
`Chr6:3731407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr6:3731409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B72,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057770240.1

293 aa

146

293

zf-C3HC4

IBR

IBR_1

PF00097 zf-C3HC4 87-119 aa PF01485 IBR 162-223 aa PF01485 IBR 239-292 aa PF22191 IBR_1 250-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057770240.1`	Pfam	`PF00097`	zf-C3HC4	Domain	87	119	8.5e-05	23.1	Zinc finger, C3HC4 type (RING finger)
`XP_057770240.1`	Pfam	`PF01485`	IBR	Domain	162	223	2e-20	73.3	IBR domain, a half RING-finger domain
`XP_057770240.1`	Pfam	`PF01485`	IBR	Domain	239	292	2e-20	73.3	IBR domain, a half RING-finger domain
`XP_057770240.1`	Pfam	`PF22191`	IBR_1	Domain	250	288	1.2e-11	44.9	IBR domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057914257.1
ATGGAATCCCAACAAATGGCCCTATCCTGCAACGACGAATACATCGCTTCAATCATCGTCAGCAGCTCCGAAAATCCCCAAATCAACGGAACCCTAATGTCCGACGACGATTTCGCACAAGAACTGCAGCTGCAGGAAGTCATTATCTCTTCGCTAATCAACCCCCGCCCAGCGAAATCCTCCGCCGAAATCGGCGAATCGTCGAAAACGGCGGCGGAGGAAGGCGGCGGAGAGTCGTCTTCGCAATCGCAGTCCCTCTG...

CDS

1 records

下载 CDS FASTA

LOC130990059
ATGGAATCCCAACAAATGGCCCTATCCTGCAACGACGAATACATCGCTTCAATCATCGTCAGCAGCTCCGAAAATCCCCAAATCAACGGAACCCTAATGTCCGACGACGATTTCGCACAAGAACTGCAGCTGCAGGAAGTCATTATCTCTTCGCTAATCAACCCCCGCCCAGCGAAATCCTCCGCCGAAATCGGCGAATCGTCGAAAACGGCGGCGGAGGAAGGCGGCGGAGAGTCGTCTTCGCAATCGCAGTCCCTCTG...

Protein

1 records

下载 Protein FASTA

XP_057770240.1
MESQQMALSCNDEYIASIIVSSSENPQINGTLMSDDDFAQELQLQEVIISSLINPRPAKSSAEIGESSKTAAEEGGGESSSQSQSLCEICAEKKDAGSMFPLLGCSHSFCKDCISRHVTIKVKKRAIADAAAALACPGAGCGGSLDAAACRAALAPKAAAAWDELLCEAAIAAAERVYCPYRNCSALLVDDGGGGEIREAECPVCRRLFCARCGVPWHAGVDCEGFSKLGKDEREREDLMVHDLAEKKKWKRCKRCRFFV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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