当前解析结果
SmilChr06G000462| 统一新 Gene ID | SmilChr06G000462 |
|---|---|
| 名称 | SmilChr06G000462 |
| 描述 | E3 ubiquitin-protein ligase RSL1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 3736057 - 3738527 / + |
| NCBI Gene ID | LOC130988013 |
|---|---|
| GeneID | 130988013 |
| locus_tag | - |
| NCBI Name | LOC130988013 |
| 原始查询 | SmilChr06G000462 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase RSL1-like |
| 产物 | E3 ubiquitin-protein ligase RSL1-like |
| Arabidopsis | AT3G14250 (AT3G14250)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820645] identity=41.4; qcov=0.819; evalue=8.8e-54; confidence=medium |
| Rice | Os08g0451800- identity=42.2; qcov=0.831; evalue=3.34e-58; confidence=medium |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF01485 (IBR); PF22191 (IBR_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988013 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767739.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057767739.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057767739.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057767739.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057767739.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:3736191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C85 |
Chr6:3736242 |
TC |
T |
1bp_deletion | frameshift_variant | 4 | B104,B29,C44,D8 |
Chr6:3736242 |
TC |
T |
1bp_deletion | CDS_variant | 4 | B104,B29,C44,D8 |
Chr6:3736246 |
CTT |
C |
2bp_deletion | frameshift_variant | 4 | B104,B29,C44,D8 |
Chr6:3736246 |
CTT |
C |
2bp_deletion | CDS_variant | 4 | B104,B29,C44,D8 |
Chr6:3736325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B137,C58 |
Chr6:3736415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr6:3736431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr6:3736479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr6:3736487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr6:3736548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr6:3736583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767739.1PF00097
zf-C3HC4 48-93 aa
PF01485
IBR 117-178 aa
PF01485
IBR 196-241 aa
PF22191
IBR_1 202-239 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767739.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 48 | 93 | 4.9e-06 | 27.0 | Zinc finger, C3HC4 type (RING finger) |
XP_057767739.1 |
Pfam | PF01485 |
IBR | Domain | 117 | 178 | 6.5e-19 | 68.5 | IBR domain, a half RING-finger domain |
XP_057767739.1 |
Pfam | PF01485 |
IBR | Domain | 196 | 241 | 6.5e-19 | 68.5 | IBR domain, a half RING-finger domain |
XP_057767739.1 |
Pfam | PF22191 |
IBR_1 | Domain | 202 | 239 | 9.8e-08 | 32.5 | IBR domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。