Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000469`

染色体: Chr06 坐标: 3824018-3827829 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000469`
名称	SmilChr06G000469
描述	ubiquitin receptor RAD23b
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3824018 - 3827829 / `+`

ID 对照

NCBI Gene ID	`LOC130988022`
GeneID	`130988022`
locus_tag	`-`
NCBI Name	`LOC130988022`
原始查询	`SmilChr06G000469`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin receptor RAD23b
产物	ubiquitin receptor RAD23b
Arabidopsis	`AT1G79650` (RAD23B) Rad23 UV excision repair protein family [Source:NCBI gene (formerly Entrezgene);Acc:844304] identity=64.9; qcov=1.03; evalue=1.05e-177; confidence=high
Rice	`Os02g0179300` - identity=59.9; qcov=1.01; evalue=8.54e-143; confidence=high
GO	GO:0003684 (damaged DNA binding); GO:0005654 (nucleoplasm); GO:0005829 (cytosol); GO:0006289 (nucleotide-excision repair); GO:0031593 (polyubiquitin modification-dependent protein binding); GO:0043130 (ubiquitin binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0070628 (proteasome binding)
KEGG	smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00240 (ubiquitin); PF00627 (UBA); PF09280 (XPC-binding); PF11976 (Rad60-SLD)
InterPro	-
eggNOG	-
NR	GeneID:130988022

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767748.1`
2	Cytoplasm	细胞质	1.00000	`XP_057767748.1`
3	Cytosol	细胞质基质	1.00000	`XP_057767748.1`
4	Nucleoplasm	核质	0.20000	`XP_057767748.1`
5	Nucleus membrane	核膜	0.20000	`XP_057767749.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3825040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:3825259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:3825467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A5,A7
`Chr6:3825494`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr6:3825538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr6:3826198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:3826570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr6:3826610`	`CA`	`C`	1bp_deletion	frameshift_variant	1	C66
`Chr6:3826610`	`CA`	`C`	1bp_deletion	CDS_variant	1	C66
`Chr6:3826615`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767748.1

413 aa

206

413

Rad60-SLD

ubiquitin

UBA

XPC-binding

UBA

PF11976 Rad60-SLD 1-73 aa PF00240 ubiquitin 3-76 aa PF00627 UBA 174-211 aa PF09280 XPC-binding 288-343 aa PF00627 UBA 369-404 aa

XP_057767749.1

388 aa

194

388

Rad60-SLD

ubiquitin

UBA

XPC-binding

UBA

PF11976 Rad60-SLD 1-73 aa PF00240 ubiquitin 3-76 aa PF00627 UBA 174-211 aa PF09280 XPC-binding 263-318 aa PF00627 UBA 344-379 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767748.1`	Pfam	`PF11976`	Rad60-SLD	Family	1	73	7e-08	32.9	Ubiquitin-2 like Rad60 SUMO-like
`XP_057767748.1`	Pfam	`PF00240`	ubiquitin	Domain	3	76	2.1e-15	56.9	Ubiquitin family
`XP_057767748.1`	Pfam	`PF00627`	UBA	Domain	174	211	5.8e-24	84.2	UBA/TS-N domain
`XP_057767748.1`	Pfam	`PF09280`	XPC-binding	Domain	288	343	1.1e-22	80.1	XPC-binding domain
`XP_057767748.1`	Pfam	`PF00627`	UBA	Domain	369	404	5.8e-24	84.2	UBA/TS-N domain
`XP_057767749.1`	Pfam	`PF11976`	Rad60-SLD	Family	1	73	6.4e-08	33.0	Ubiquitin-2 like Rad60 SUMO-like
`XP_057767749.1`	Pfam	`PF00240`	ubiquitin	Domain	3	76	1.9e-15	57.1	Ubiquitin family
`XP_057767749.1`	Pfam	`PF00627`	UBA	Domain	174	211	5e-24	84.4	UBA/TS-N domain
`XP_057767749.1`	Pfam	`PF09280`	XPC-binding	Domain	263	318	1e-22	80.2	XPC-binding domain
`XP_057767749.1`	Pfam	`PF00627`	UBA	Domain	344	379	5e-24	84.4	UBA/TS-N domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911766.1
GAATTGAAAAGCTCTAAAGATTTTGTTGCTGCACACTTTTTCGTTCCCTCAATTCCCCTCTCTCTCCTCTCTCGATCCATAGTGTGCTTCTAGGGTTTGGATATTTCTCAACAATTTAGTATTTTTCAGATTAAAATTGTTGATATGAAGCTCACCGTCAAAACTCTCAAAGGCAGCCACTTCCAAATTAGCGTTCATGCTACCGATACCATAATGGCTGTTAAGAAATGCATTGAAGATGTGCAAGGCAAAGATAATTA...

XM_057911765.1
ATTGAAAAGCTCTAAAGATTTTGTTGCTGCACACTTTTTCGTTCCCTCAATTCCCCTCTCTCTCCTCTCTCGATCCATAGTGTGCTTCTAGGGTTTGGATATTTCTCAACAATTTAGTATTTTTCAGATTAAAATTGTTGATATGAAGCTCACCGTCAAAACTCTCAAAGGCAGCCACTTCCAAATTAGCGTTCATGCTACCGATACCATAATGGCTGTTAAGAAATGCATTGAAGATGTGCAAGGCAAAGATAATTATC...

CDS

2 records

下载 CDS FASTA

LOC130988022
ATGAAGCTCACCGTCAAAACTCTCAAAGGCAGCCACTTCCAAATTAGCGTTCATGCTACCGATACCATAATGGCTGTTAAGAAATGCATTGAAGATGTGCAAGGCAAAGATAATTATCCATGTGGTCAGCAGTTGTTGATTTATAACGGGAAAGTGTTGAAGGATGAAAGTACCTTAGCTGATAACAAGGTCTCCGAAGATGGCTTTCTTGTTGTCATGCTAAGCAAGAGCAAAAGTTTGAGTTCAAGTGCTTCAACTTC...

Protein

2 records

下载 Protein FASTA

XP_057767748.1
MKLTVKTLKGSHFQISVHATDTIMAVKKCIEDVQGKDNYPCGQQLLIYNGKVLKDESTLADNKVSEDGFLVVMLSKSKSLSSSASTSSQPASTAASASNPAAPASNPAAPASTPAAPASTPAPPASNPSPAAEARPSVLAPKSTGPASVAPLASDQSGSYEEAASSLVVSDNLEQTIQQLIDMGGGSWDKETVRRALRAAYNNPERAVDYLYSGIPENTEVDVPLAQPPVDSIVASGPPALGGPNSSPLNLFPQVLLHPG...

XP_057767749.1
MKLTVKTLKGSHFQISVHATDTIMAVKKCIEDVQGKDNYPCGQQLLIYNGKVLKDESTLADNKVSEDGFLVVMLSKSKSLSSSASTSSQPASTAASASNPAAPASNPAAPASTPAAPASTPAPPASNPSPAAEARPSVLAPKSTGPASVAPLASDQSGSYEEAASSLVVSDNLEQTIQQLIDMGGGSWDKETVRRALRAAYNNPERAVDYLYSGIPENTEVDVPLAQPPVDSIVASGPPALGGPNSSPLNLFPQETISGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器