Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000474`

染色体: Chr06 坐标: 3854849-3858782 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000474`
名称	SmilChr06G000474
描述	AP2-like ethylene-responsive transcription factor At1g16060
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3854849 - 3858782 / `-`

ID 对照

NCBI Gene ID	`LOC130988027`
GeneID	`130988027`
locus_tag	`-`
NCBI Name	`LOC130988027`
原始查询	`SmilChr06G000474`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AP2-like ethylene-responsive transcription factor At1g16060
产物	AP2-like ethylene-responsive transcription factor At1g16060
Arabidopsis	`AT1G79700` (WRI4) Integrase-type DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844309] identity=65.5; qcov=0.837; evalue=6.31e-76; confidence=high
Rice	`Os09g0423800` (AP2/EREBP#153) - identity=55.8; qcov=0.989; evalue=1.43e-71; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00847 (AP2)
InterPro	-
eggNOG	-
NR	GeneID:130988027

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767755.1`
2	Chromosome	染色体	0.00000	`XP_057767755.1`
3	Centromere	着丝粒	0.00000	`XP_057767755.1`
4	Chromatin	染色质	0.00000	`XP_057767755.1`
5	Telomere	端粒	0.00000	`XP_057767755.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3855225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C41,D1
`Chr6:3855469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C12,C53
`Chr6:3855479`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr6:3856329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C82
`Chr6:3856344`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr6:3856347`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr6:3856359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr6:3857332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C41,D1
`Chr6:3857344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr6:3857524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B1,B140,C83,D7
`Chr6:3857716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr6:3857728`	`G`	`GA`	1bp_insertion	frameshift_variant	14	A11,B139,B20,B32,B53,B56,B58,B96,C12,C23,C33,C42,C53,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767755.1

309 aa

154

309

AP2

PF00847 AP2 47-104 aa PF00847 AP2 147-199 aa

XP_057767756.1

263 aa

132

263

AP2

PF00847 AP2 101-153 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767755.1`	Pfam	`PF00847`	AP2	Domain	47	104	6.2e-22	78.4	AP2 domain
`XP_057767755.1`	Pfam	`PF00847`	AP2	Domain	147	199	6.2e-22	78.4	AP2 domain
`XP_057767756.1`	Pfam	`PF00847`	AP2	Domain	101	153	5.6e-14	52.9	AP2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911772.1
AAGTGTGATACACATATATATAGCCCACAGCTAGATACAATCTCACTCAACATAAACGCGGCCGCCGTTGAATCCGCCACCCTTCCTCCGCCCTAATCCGCCATTTCCTACCCTCATTCATTCGCCATTGCCGACCTCCCTTCCAATTAAACTGTAATTTCATGGCGCGGTCCTCAAAGCAGAAGAATCGCCCCCTCGCCGCCGCCACCGCCGCCGAGATTTCCGACAATGACCGCCGCGACGGGAAGAGAAAGCGGAAA...

XM_057911773.1
TCCAAAATATAAATTAATAAAAAAAGTGTAGATGATGTGGCATTTGTTTTTATTTCCATTGGCTCTATCCAATTCACCTTATCCAATATCCAATAAAAATATTTTATTTTTTCTTGTAATTTATGAAAATATTTTAGGGGCCTACAATGACGAGGAAGCAGCAGCTCGTGCTTACGACTTGGCTGCACTGAAATATTGGGGGCAAGACACCACTTTAAATTTCCCACTGCCCACCTATCAAAAAGAGCTTCAAGAAATGG...

CDS

2 records

下载 CDS FASTA

LOC130988027
ATGGCGCGGTCCTCAAAGCAGAAGAATCGCCCCCTCGCCGCCGCCACCGCCGCCGAGATTTCCGACAATGACCGCCGCGACGGGAAGAGAAAGCGGAAAAGTGCACCTAGAGAGTCTCCGCAACAACGCAGCTCCATTCACAGAGGCGTTACGAGGCACCGGTGGACAGGGCGTTTTGAAGCTCATTTATGGGATAAGGATTGCTGGAATGAGTCACAAAACAAAAAAGGAAGACAAGTATATTTAGGGGCCTACAATGA...

LOC130988027
ATGATGTGGCATTTGTTTTTATTTCCATTGGCTCTATCCAATTCACCTTATCCAATATCCAATAAAAATATTTTATTTTTTCTTGTAATTTATGAAAATATTTTAGGGGCCTACAATGACGAGGAAGCAGCAGCTCGTGCTTACGACTTGGCTGCACTGAAATATTGGGGGCAAGACACCACTTTAAATTTCCCACTGCCCACCTATCAAAAAGAGCTTCAAGAAATGGAGGGGCAGTCAAAGGAAGAATACATAAGTTC...

Protein

2 records

下载 Protein FASTA

XP_057767755.1
MARSSKQKNRPLAAATAAEISDNDRRDGKRKRKSAPRESPQQRSSIHRGVTRHRWTGRFEAHLWDKDCWNESQNKKGRQVYLGAYNDEEAAARAYDLAALKYWGQDTTLNFPLPTYQKELQEMEGQSKEEYISSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIKYRGNNAVTNFDLSRYINCNMDDNSPIARESPTAAEAEAAASPPLPIGSGGEALGLLLQSSKFKEM...

XP_057767756.1
MMWHLFLFPLALSNSPYPISNKNILFFLVIYENILGAYNDEEAAARAYDLAALKYWGQDTTLNFPLPTYQKELQEMEGQSKEEYISSLRSRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIKYRGNNAVTNFDLSRYINCNMDDNSPIARESPTAAEAEAAASPPLPIGSGGEALGLLLQSSKFKEMMEPNPPRSSFPDDIQTSFDFQDSSTYADENDIIFSDYDFLSMFQCG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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