Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000478`

染色体: Chr06 坐标: 3887120-3893486 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000478`
名称	SmilChr06G000478
描述	uncharacterized SmilChr06G000478
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	3887120 - 3893486 / `+`

ID 对照

NCBI Gene ID	`LOC130988032`
GeneID	`130988032`
locus_tag	`-`
NCBI Name	`LOC130988032`
原始查询	`SmilChr06G000478`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent DNA helicase [Source:NCBI gene (formerly Entrezgene);Acc:816944]; symbol=ASG1; hit=AT2G24100; species=arabidopsis; confidence=high
产物	ATP-dependent DNA helicase [Source:NCBI gene (formerly Entrezgene);Acc:816944]; symbol=ASG1; hit=AT2G24100; species=arabidopsis; confidence=high
Arabidopsis	`AT2G24100` (ASG1) ATP-dependent DNA helicase [Source:NCBI gene (formerly Entrezgene);Acc:816944] identity=48.4; qcov=1.01; evalue=3.89e-147; confidence=high
Rice	`Os06g0186600` - identity=52; qcov=0.756; evalue=5.99e-123; confidence=high
GO	-
KEGG	-
Pfam	PF24818 (PH_TRF2_HOY1)
InterPro	-
eggNOG	-
NR	GeneID:130988032

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767761.1`
2	Chromosome	染色体	0.00000	`XP_057767761.1`
3	Centromere	着丝粒	0.00000	`XP_057767761.1`
4	Chromatin	染色质	0.00000	`XP_057767761.1`
5	Telomere	端粒	0.00000	`XP_057767761.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:3888231`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C33
`Chr6:3888231`	`T`	`TC`	1bp_insertion	CDS_variant	1	C33
`Chr6:3888255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr6:3888517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,C82
`Chr6:3890924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B51,B53,B98
`Chr6:3891056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:3892919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B45,B67,C63
`Chr6:3892922`	`GGC`	`G`	2bp_deletion	frameshift_variant	1	B101
`Chr6:3892922`	`GGC`	`G`	2bp_deletion	CDS_variant	1	B101
`Chr6:3893203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767761.1

538 aa

269

538

PH_TRF2_HOY1

PF24818 PH_TRF2_HOY1 121-238 aa

XP_057767763.1

537 aa

268

537

PH_TRF2_HOY1

PF24818 PH_TRF2_HOY1 120-237 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767761.1`	Pfam	`PF24818`	PH_TRF2_HOY1	Domain	121	238	4e-60	201.7	TRF2/HOY1 PH-like domain
`XP_057767763.1`	Pfam	`PF24818`	PH_TRF2_HOY1	Domain	120	237	4e-60	201.7	TRF2/HOY1 PH-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911780.1
GTGCGAGGGGCACCGAAAACCCCGAAGCACGTAAAGGAGACACGTGTGAGTCGCCGCCCTCGAATAAAAATAAGTAATTCCAGTTCAACTCGCCCACCATTATTTCGATCTTCTTCTTCAGATAAATTATAAGAAATTAAAAAAAAAGAGCGAAAAATTTCCGTACAAAAATCCATTTTCCAGCCAGAGTCTCTTCGATCTGAAGATCCTATAAAATGGTGCAGTTGATGAAGAACGACGAATCAGCATCGCAGGGCGAG...

XM_057911778.1
AGGGGCACCGAAAACCCCGAAGCACGTAAAGGAGACACGTGTGAGTCGCCGCCCTCGAATAAAAATAAGTAATTCCAGTTCAACTCGCCCACCATTATTTCGATCTTCTTCTTCAGATAAATTATAAGAAATTAAAAAAAAAGAGCGAAAAATTTCCGTACAAAAATCCATTTTCCAGCCAGAGTCTCTTCGATCTGAAGATCCTATAAAATGGTGCAGTTGATGAAGAACGACGAATCAGCATCGCAGGGCGAGAAGAC...

CDS

2 records

下载 CDS FASTA

LOC130988032
ATGGTGCAGTTGATGAAGAACGACGAATCAGCATCGCAGGGCGAGAAGACGGCGGCGCCGCCGGTGAAGATGGAGGTGGAGGATTCCTTGGAGGAAGAGCACGGCCCACTCCACAAGCGCCCCAAACAGCAGCAGCAGCAGAGTTTAGGAATGGATGGTTTCGGAGTGCCACCTTCGCAATACAATCCTCTTGATGAGCCAAGTCCCTTAGGTTTGCGACTGAGGAAAAGCCCATCACTGCTGGAGTTGATTCAAATGAA...

LOC130988032
ATGGTGCAGTTGATGAAGAACGACGAATCAGCATCGCAGGGCGAGAAGACGGCGGCGCCGCCGGTGAAGATGGAGGTGGAGGATTCCTTGGAGGAAGAGCACGGCCCACTCCACAAGCGCCCCAAACAGCAGCAGCAGAGTTTAGGAATGGATGGTTTCGGAGTGCCACCTTCGCAATACAATCCTCTTGATGAGCCAAGTCCCTTAGGTTTGCGACTGAGGAAAAGCCCATCACTGCTGGAGTTGATTCAAATGAAACT...

Protein

2 records

下载 Protein FASTA

XP_057767761.1
MVQLMKNDESASQGEKTAAPPVKMEVEDSLEEEHGPLHKRPKQQQQQSLGMDGFGVPPSQYNPLDEPSPLGLRLRKSPSLLELIQMKLSHSSVPKVGSQSNSKKESSRAGGASGDKLKASNFPGSVLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMALKANYNDDAPGSLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASICRQHFLECPQGLLGKHFEKLIQCDPRLNFLSQQGE...

XP_057767763.1
MVQLMKNDESASQGEKTAAPPVKMEVEDSLEEEHGPLHKRPKQQQQSLGMDGFGVPPSQYNPLDEPSPLGLRLRKSPSLLELIQMKLSHSSVPKVGSQSNSKKESSRAGGASGDKLKASNFPGSVLRIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGGLKNKIEIQWSDIMALKANYNDDAPGSLDVVLARQPLFFRETNPQPRKHTLWQATSDFTGGQASICRQHFLECPQGLLGKHFEKLIQCDPRLNFLSQQGET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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