Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000501`

染色体: Chr06 坐标: 4124009-4127871 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000501`
名称	SmilChr06G000501
描述	putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4124009 - 4127871 / `+`

ID 对照

NCBI Gene ID	`LOC130988052`
GeneID	`130988052`
locus_tag	`-`
NCBI Name	`LOC130988052`
原始查询	`SmilChr06G000501`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130
产物	putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130
Arabidopsis	`AT2G24130` (AT2G24130) Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816947] identity=61; qcov=0.996; evalue=0; confidence=high
Rice	`Os06g0186100` - identity=47.5; qcov=1.04; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130988052

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057767789.1`
2	Nucleus	细胞核	0.00000	`XP_057767789.1`
3	Chromosome	染色体	0.00000	`XP_057767789.1`
4	Centromere	着丝粒	0.00000	`XP_057767789.1`
5	Chromatin	染色质	0.00000	`XP_057767789.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4124139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr6:4124193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,B51
`Chr6:4124235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,B54
`Chr6:4124245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,C39,C71
`Chr6:4124246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,B51,B72
`Chr6:4124253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,B51
`Chr6:4124281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,B57
`Chr6:4124327`	`TGC`	`T`	2bp_deletion	frameshift_variant	1	C56
`Chr6:4124327`	`TGC`	`T`	2bp_deletion	CDS_variant	1	C56
`Chr6:4124398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B70,B71,B74,B81,C62
`Chr6:4124422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B40
`Chr6:4124460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B51,B56,B96,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767789.1

968 aa

484

968

LRRNT_2

LRR_1

LRR_6

LRR_1

LRR_8

LRR_1

LRR_6

LRR_1

LRR_8

LRR_1

LRR_8

LRR_6

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 27-66 aa PF00560 LRR_1 95-117 aa PF00560 LRR_1 119-141 aa PF00560 LRR_1 144-163 aa PF00560 LRR_1 169-185 aa PF13516 LRR_6 272-288 aa PF00560 LRR_1 275-297 aa PF00560 LRR_1 323-345 aa PF00560 LRR_1 347-369 aa PF13855 LRR_8 347-406 aa PF00560 LRR_1 374-393 aa PF00560 LRR_1 395-417 aa PF13516 LRR_6 416-432 aa PF00560 LRR_1 419-441 aa PF00560 LRR_1 472-490 aa PF13855 LRR_8 472-527 aa PF00560 LRR_1 493-514 aa PF13855 LRR_8 493-550 aa PF13516 LRR_6 515-530 aa PF00560 LRR_1 517-536 aa PF00069 Pkinase 653-943 aa PF07714 PK_Tyr_Ser-Thr 655-944 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767789.1`	Pfam	`PF08263`	LRRNT_2	Family	27	66	4.1e-11	43.7	Leucine rich repeat N-terminal domain
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	95	117	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	119	141	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	144	163	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	169	185	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF13516`	LRR_6	Repeat	272	288	5e-08	33.1	Leucine Rich repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	275	297	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	323	345	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	347	369	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF13855`	LRR_8	Repeat	347	406	5.5e-40	135.7	Leucine rich repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	374	393	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	395	417	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF13516`	LRR_6	Repeat	416	432	5e-08	33.1	Leucine Rich repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	419	441	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	472	490	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF13855`	LRR_8	Repeat	472	527	5.5e-40	135.7	Leucine rich repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	493	514	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF13855`	LRR_8	Repeat	493	550	5.5e-40	135.7	Leucine rich repeat
`XP_057767789.1`	Pfam	`PF13516`	LRR_6	Repeat	515	530	5e-08	33.1	Leucine Rich repeat
`XP_057767789.1`	Pfam	`PF00560`	LRR_1	Repeat	517	536	4.9e-52	163.3	Leucine Rich Repeat
`XP_057767789.1`	Pfam	`PF00069`	Pkinase	Domain	653	943	2.5e-40	139.3	Protein kinase domain
`XP_057767789.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	655	944	4.8e-40	138.2	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911806.1
AAACATTTGTCACACCCCCTTATAATTAACAGTGCGTGCTGCATGTTTTCTTCCCACATTCCAACATTCACCTCAATCTCTCTCTCAATCCCTCCAAATCCAAACCTCAATTAATATATCACAACAATGGGTTTGCACTCCAAATTCTCTCTACTCTCCTCCATCCTAGTCTTGTACATGCTCAGCGTCGACGCTCAAATATTAGACGAGCGCGCCGCGCTCCTCTCCTTCGTGTCCGGGATCAGCAGCGACCCCGAACA...

CDS

1 records

下载 CDS FASTA

LOC130988052
ATGGGTTTGCACTCCAAATTCTCTCTACTCTCCTCCATCCTAGTCTTGTACATGCTCAGCGTCGACGCTCAAATATTAGACGAGCGCGCCGCGCTCCTCTCCTTCGTGTCCGGGATCAGCAGCGACCCCGAACACGCCCTATCCAACTGGAACGCCTCCGACCTCCCCCTCTGCAAATGGTCGGGGGTCGGGTGCGACATGAGCAAGAACAGAGTCATAGAGCTCAACCTCAGCCACAAGTCCCTCCGCGGCACCATCTC...

Protein

1 records

下载 Protein FASTA

XP_057767789.1
MGLHSKFSLLSSILVLYMLSVDAQILDERAALLSFVSGISSDPEHALSNWNASDLPLCKWSGVGCDMSKNRVIELNLSHKSLRGTISPSLFALSQLEILDLSGNFLHGRIPPEIGSLLRLKELSLASNSLQGNIPSQVGTLKQLVYLNLGSNKLDGEIPSSLFCNGSSSLQYLDLSNNSLHGQLPLQNQCALSELRYLLLWSNSLAGQVPLPLSNSSKLEWLDLEFNHFEGELPCNILSRMPHLKFLYLSYNHFSSQDGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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