Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000507`

染色体: Chr06 坐标: 4189531-4199209 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000507`
名称	SmilChr06G000507
描述	uncharacterized SmilChr06G000507
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4189531 - 4199209 / `+`

ID 对照

NCBI Gene ID	`LOC130988057`
GeneID	`130988057`
locus_tag	`-`
NCBI Name	`LOC130988057`
原始查询	`SmilChr06G000507`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829195]; symbol=PDE327; hit=AT4G30720; species=arabidopsis; confidence=high
产物	FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829195]; symbol=PDE327; hit=AT4G30720; species=arabidopsis; confidence=high
Arabidopsis	`AT4G30720` (PDE327) FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829195] identity=68.2; qcov=0.956; evalue=0; confidence=high
Rice	`Os05g0411200` (TCD5) - identity=64.3; qcov=0.946; evalue=0; confidence=high
GO	GO:0071949 (FAD binding)
KEGG	-
Pfam	PF00070 (Pyr_redox); PF01494 (FAD_binding_3); PF21688 (FAD-depend_C)
InterPro	-
eggNOG	-
NR	GeneID:130988057

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057767798.1`
2	Mitochondrion	线粒体	0.80000	`XP_057767798.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057767798.1`
4	Nucleus	细胞核	0.00000	`XP_057767798.1`
5	Chromosome	染色体	0.00000	`XP_057767798.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4189725`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B117,B57
`Chr6:4190299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,D11
`Chr6:4195763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B66,B76,B94,D6
`Chr6:4195771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B133,B67,C44
`Chr6:4195808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr6:4195896`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B9
`Chr6:4196312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr6:4196844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B130,B37
`Chr6:4196853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr6:4196855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B66,B76,B94,D6
`Chr6:4196916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:4198279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,B93,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767798.1

708 aa

354

708

FAD_binding_3

Pyr_redox

FAD-depend_C

PF01494 FAD_binding_3 225-263 aa PF00070 Pyr_redox 225-275 aa PF21688 FAD-depend_C 419-634 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767798.1`	Pfam	`PF01494`	FAD_binding_3	Domain	225	263	1.4e-06	28.5	FAD binding domain
`XP_057767798.1`	Pfam	`PF00070`	Pyr_redox	Domain	225	275	3.9e-09	37.6	Pyridine nucleotide-disulphide oxidoreductase
`XP_057767798.1`	Pfam	`PF21688`	FAD-depend_C	Domain	419	634	2.3e-64	217.9	FAD-dependent protein, C-terminal domain-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911815.1
ATCCTAAAACCCAACATTGCATTGTATCTCTTTTTTCCGAAAAAAAAAAACCCCCAACATTTTGCACCTTATCGGAATTCGCCAGCTGACAAGCGAGAATGCCCGTTATCTCTCATAATCTCGCTGTTTCATTCAACAAATTTTCAGCCTCAACATTTAACTGCAGATTCGCATTTCGGAGTCCCGACCAATCTGTCGAATTCCGACAATCTCCTCGTATAAATTGTGCTAAGAAAGCCAAAAGGACCGGAAAATTGAGG...

CDS

1 records

下载 CDS FASTA

LOC130988057
ATGCCCGTTATCTCTCATAATCTCGCTGTTTCATTCAACAAATTTTCAGCCTCAACATTTAACTGCAGATTCGCATTTCGGAGTCCCGACCAATCTGTCGAATTCCGACAATCTCCTCGTATAAATTGTGCTAAGAAAGCCAAAAGGACCGGAAAATTGAGGTACCCCTCGGAGAAAAGGAAGTTAAGACAGCAGAAACAGACTAAAAGCGACGCTGCAACACGTCTGGAAGGTGTTTGGAGAATTTCCCGGCTTGCAGT...

Protein

1 records

下载 Protein FASTA

XP_057767798.1
MPVISHNLAVSFNKFSASTFNCRFAFRSPDQSVEFRQSPRINCAKKAKRTGKLRYPSEKRKLRQQKQTKSDAATRLEGVWRISRLAVSVQDDPGKDFWDVSEALLKEIAKVLEFPVASMLPREAFTVVRKSFDARKFQKEPKFVYTVDMDVHKLLHLEPHTWEFISELEPKNGSLEFLHHDKAFGDLSSIIRDHQKIKESATSAEDVPSNNIAGSDKFSATRKPRVVVVGSGPSGLFASLVLAEVGADVTLVERGEAVEQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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