当前解析结果
SmilChr06G000509| 统一新 Gene ID | SmilChr06G000509 |
|---|---|
| 名称 | SmilChr06G000509 |
| 描述 | AUGMIN subunit 8 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 4227979 - 4233157 / + |
| NCBI Gene ID | LOC130988058 |
|---|---|
| GeneID | 130988058 |
| locus_tag | - |
| NCBI Name | LOC130988058 |
| 原始查询 | SmilChr06G000509 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AUGMIN subunit 8 |
| 产物 | AUGMIN subunit 8 |
| Arabidopsis | AT4G30710 (QWRF8)QWRF motif protein (DUF566) [Source:NCBI gene (formerly Entrezgene);Acc:829194] identity=45.3; qcov=1.06; evalue=3.73e-128; confidence=high |
| Rice | Os09g0422600- identity=37.7; qcov=1.01; evalue=2.11e-102; confidence=medium |
| GO | GO:0005737 (cytoplasm); GO:0005813 (centrosome); GO:0005880 (nuclear microtubule); GO:0007098 (centrosome cycle); GO:0008017 (microtubule binding); GO:0051225 (spindle assembly) |
| KEGG | - |
| Pfam | PF04484 (QWRF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988058 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057767799.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057767799.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057767799.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057767799.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057767799.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:4230112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:4230452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B137,C28,C73 |
Chr6:4230532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B55,C2 |
Chr6:4230560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B30,B75,B84,B93,C19 |
Chr6:4230593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C44 |
Chr6:4230644 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | A22 |
Chr6:4230644 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | A22 |
Chr6:4230720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr6:4230757 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B67,C41,C44 |
Chr6:4230781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B67,C41,C44 |
Chr6:4230784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B110,B136,B58,B86,C18 |
Chr6:4230787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767799.1PF04484
QWRF 251-555 aa
XP_057767800.1PF04484
QWRF 251-555 aa
XP_057767801.1PF04484
QWRF 251-555 aa
XP_057767802.1PF04484
QWRF 251-555 aa
XP_057767803.1PF04484
QWRF 251-555 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767799.1 |
Pfam | PF04484 |
QWRF | Family | 251 | 555 | 5.6e-80 | 270.0 | QWRF family |
XP_057767800.1 |
Pfam | PF04484 |
QWRF | Family | 251 | 555 | 5.6e-80 | 270.0 | QWRF family |
XP_057767801.1 |
Pfam | PF04484 |
QWRF | Family | 251 | 555 | 5.6e-80 | 270.0 | QWRF family |
XP_057767802.1 |
Pfam | PF04484 |
QWRF | Family | 251 | 555 | 5.6e-80 | 270.0 | QWRF family |
XP_057767803.1 |
Pfam | PF04484 |
QWRF | Family | 251 | 555 | 5.6e-80 | 270.0 | QWRF family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。