Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000537`

染色体: Chr06 坐标: 4491712-4496613 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000537`
名称	SmilChr06G000537
描述	uncharacterized SmilChr06G000537
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4491712 - 4496613 / `+`

ID 对照

NCBI Gene ID	`LOC130988081`
GeneID	`130988081`
locus_tag	`-`
NCBI Name	`LOC130988081`
原始查询	`SmilChr06G000537`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	signal recognition particle receptor alpha subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:829183]; symbol=AT4G30600; hit=AT4G30600; species=arabidopsis; confidence=high
产物	signal recognition particle receptor alpha subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:829183]; symbol=AT4G30600; hit=AT4G30600; species=arabidopsis; confidence=high
Arabidopsis	`AT4G30600` (AT4G30600) signal recognition particle receptor alpha subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:829183] identity=77.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os08g0480100` (OJ1113_A10.31-2) - identity=72.2; qcov=1.01; evalue=0; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005047 (signal recognition particle binding); GO:0005525 (GTP binding); GO:0005785 (signal recognition particle receptor complex); GO:0005789 (endoplasmic reticulum membrane); GO:0006614 (SRP-dependent cotranslational protein targeting to membrane); GO:0016887 (ATP hydrolysis activity)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage))
Pfam	PF00448 (SRP54); PF02881 (SRP54_N); PF04086 (SRP-alpha_N)
InterPro	-
eggNOG	-
NR	GeneID:130988081

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057767821.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057767821.1`
3	Nucleus	细胞核	0.00000	`XP_057767821.1`
4	Chromosome	染色体	0.00000	`XP_057767821.1`
5	Centromere	着丝粒	0.00000	`XP_057767821.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4493004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:4493067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr6:4493304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:4493343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:4493395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr6:4493449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B137,C43,D11,D6
`Chr6:4493791`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B3,B40,C53,C60
`Chr6:4493793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C82
`Chr6:4495233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:4496200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:4496210`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,C21
`Chr6:4496440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767821.1

623 aa

312

623

SRP-alpha_N

SRP54_N

SRP54

PF04086 SRP-alpha_N 28-124 aa PF02881 SRP54_N 319-387 aa PF00448 SRP54 418-622 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767821.1`	Pfam	`PF04086`	SRP-alpha_N	Domain	28	124	5.7e-31	107.6	Signal recognition particle, alpha subunit, N-terminal
`XP_057767821.1`	Pfam	`PF02881`	SRP54_N	Domain	319	387	4.2e-09	37.2	SRP54-type protein, helical bundle domain
`XP_057767821.1`	Pfam	`PF00448`	SRP54	Domain	418	622	2.7e-57	194.3	SRP54-type protein, GTPase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911838.1
GTGAAAGAATCGTAGCATGGGCGAAATGGAACACGTTAGGACCGCGCACACCGATTTTGGCCGACCAACCAAACATTCCGAGTCAGCTCCCAATATATATTCAACTCTCAAACACCCAATTCCTCTTTAATTTTCTTATTTTTATTTTTTCCTTCCTTCTCTATTGGCTTTCCTTTTTCACCAGGGATTTCTTCCATCTCCCTAACAGAATTGGCGTCAAAGATTTTCAGGATAGAACCTTTTGAGCTCTAGAGATGTTA...

CDS

1 records

下载 CDS FASTA

LOC130988081
ATGTTAGAGCAGTTACTCATATTTACAAGAGGAGGTTTAATCCTCTGGACTTGCAAAGAGCTTGGGAATGCTCTTAGAGGATCGCCCATTGATACCTTGATAAGGTCCTGCCTTTTGGAGGAAAGGTCAGGTGCTGCATCGTACAACTATGATGCCCCGGGTGCTTCATACACGCTTAAGTGGACATTTCACAATGATTTGGGGCTTGTTTTTGTTGCTGTGTATCAACGTATTCTCCATCTCTTGTATGTCGACGATCT...

Protein

1 records

下载 Protein FASTA

XP_057767821.1
MLEQLLIFTRGGLILWTCKELGNALRGSPIDTLIRSCLLEERSGAASYNYDAPGASYTLKWTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKKEFLEIYDPKRTSYNDFDDIFQQLKKEAEARAEEMKKSKQVGKPMNNNIARKQGNVQNGNMDGGNKKKSGGESGNDANGDRFKGRPLENGNLNNNHIGKGEAATLVKNNGKENGASNTGAFDVNKLQKLRSKGGKKTETVANKVSKEEPKKTTKKNRVWDDSPKEAKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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