Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000540`

染色体: Chr06 坐标: 4507934-4509938 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000540`
名称	SmilChr06G000540
描述	protein PELPK1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4507934 - 4509938 / `-`

ID 对照

NCBI Gene ID	`LOC130988084`
GeneID	`130988084`
locus_tag	`-`
NCBI Name	`LOC130988084`
原始查询	`SmilChr06G000540`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	protein PELPK1
产物	protein PELPK1
Arabidopsis	`AT5G09530` (PELPK1) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:830812] identity=46.5; qcov=0.789; evalue=5.72e-45; confidence=medium
Rice	`Os07g0599600` (OJ1634_B10.113) - identity=46.6; qcov=0.479; evalue=2.37e-13; confidence=low
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130988084

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	0.80000	`XP_057767824.1`
2	Secreted	分泌到胞外	0.20000	`XP_057767824.1`
3	Nucleus	细胞核	0.00000	`XP_057767824.1`
4	Chromosome	染色体	0.00000	`XP_057767824.1`
5	Centromere	着丝粒	0.00000	`XP_057767824.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4508323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B102,B20,C33,C58
`Chr6:4508695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C43
`Chr6:4508817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C48,D4
`Chr6:4508859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B26,B42,C54
`Chr6:4508900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B113,B132,B59,B76
`Chr6:4508911`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr6:4508982`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr6:4508996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B115,B15,B69,B82
`Chr6:4508997`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,A9
`Chr6:4509031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B8,C15,C3,C80
`Chr6:4509049`	`ACC`	`A`	2bp_deletion	frameshift_variant	10	A11,A19,B100,B131,B37,B80,C11,C21,C78,D6
`Chr6:4509143`	`GC`	`*`	1bp_deletion	CDS_variant	5	A4,B34,B41,B73,C63

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911841.1
ATCAAACTGCTTTCTTCAAATATAAATAGTGGTGACCTAACCTGCTCTTGAATTGTATTTTAATAAGCCTTATACGAGTTTTAGAGGAAACTAGTGAGGGAGAGAGAAGGCAACGCCATTAGGAAGTTGAACTAACACACTCTTCTTCTCAACAACCAAAGAAGCTAGTGTTGTTTCCACCTCATACAAATGCCTATATAAACCGTGATGCACCCCCAAACTCCATAACTCATCCAATCCAACAAAGTAAACATCTCACT...

XM_057911842.1
GGAGAGAGAAGGCAACGCCATTAGGAAGTTGAACTAACACACTCTTCTTCTCAACAACCAAAGAAGCTAGTGTTGTTTCCACCTCATACAAATGCCTATATAAACCGTGATGCACCCCCAAACTCCATAACTCATCCAATCCAACAAAGTAAACATCTCACTTAAACAAAAAGCCTTCTTGATTCAGCTATTTCCAATGGCATTTCATCGCCACCATTCCCTTTTCATGTTCTTGCTCATCACACTATCATCCATAACCA...

CDS

2 records

下载 CDS FASTA

LOC130988084
ATGGCATTTCATCGCCACCATTCCCTTTTCATGTTCTTGCTCATCACACTATCATCCATAACCAGCCAAGCAGAGGCACGCCGTCTCCTCGACTCACCTGTGCCCGATGTTCCCAAGCCCGAAATCCCATCTATACCAAAGCCAGAGCTACCTCCACTACCCAAACCTGAGCTGCCATCGTTGCCTAAGCCCGAGGTTCCAACACTGCCAAAACCTGAGGTCCCGGCATTGCCAAAGCCCGAGGTTCCAACACTGCCAAA...

Protein

2 records

下载 Protein FASTA

XP_057767824.1
MAFHRHHSLFMFLLITLSSITSQAEARRLLDSPVPDVPKPEIPSIPKPELPPLPKPELPSLPKPEVPTLPKPEVPALPKPEVPTLPKPEVPTLPKPEIPTLPKPEVPTLPKPEVPTLPKPEIPTLPKPELPTLPKPEVPALPKPTLEKAELPPLPKPALPEMPKPEVPAVPKPEVPTLPKPEVPAVPKPEVPTLPKPEVPAVPKPEVPTLPKPEVPVVPKPEVPTLPKLEVPTLPKPEVPTLPKPEVPAVPKPEVPMLPK...

XP_057767825.1
MAFHRHHSLFMFLLITLSSITSQAEARRLLDSPVPDVPKPEIPSIPKPELPPLPKPELPSLPKPEVPTLPKPEVPALPKPEVPTLPKPEVPTLPKPEIPTLPKPEVPTLPKPEVPTLPKPEIPTLPKPELPTLPKPEVPALPKPTLEKAELPPLPKPALPEMPKPEVPAVPKPEVPTLPKPEVPAVPKPEVPTLPKPEVPAVPKPEVPTLPKPEVPVVPKPEVPTLPKLEVPTLPKPEVPTLPKPEVPAVPKPEVPMLPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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