Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000544`

染色体: Chr06 坐标: 4550674-4553191 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000544`
名称	SmilChr06G000544
描述	uncharacterized SmilChr06G000544
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4550674 - 4553191 / `+`

ID 对照

NCBI Gene ID	`LOC130988089`
GeneID	`130988089`
locus_tag	`-`
NCBI Name	`LOC130988089`
原始查询	`SmilChr06G000544`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome regulatory subunit [Source:NCBI gene (formerly Entrezgene);Acc:835906]; symbol=AT5G57950; hit=AT5G57950; species=arabidopsis; confidence=high
产物	26S proteasome regulatory subunit [Source:NCBI gene (formerly Entrezgene);Acc:835906]; symbol=AT5G57950; hit=AT5G57950; species=arabidopsis; confidence=high
Arabidopsis	`AT5G57950` (AT5G57950) 26S proteasome regulatory subunit [Source:NCBI gene (formerly Entrezgene);Acc:835906] identity=61.2; qcov=1.04; evalue=3.11e-96; confidence=high
Rice	`Os09g0420600` - identity=55.7; qcov=1; evalue=1.94e-80; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0070682 (proteasome regulatory particle assembly)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF18265 (Nas2_N)
InterPro	-
eggNOG	-
NR	GeneID:130988089

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057767830.1`
2	Cytoplasm	细胞质	1.00000	`XP_057767831.1`
3	Nucleus	细胞核	0.60000	`XP_057767831.1`
4	Chromosome	染色体	0.00000	`XP_057767830.1`
5	Centromere	着丝粒	0.00000	`XP_057767830.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4551580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C17,D10
`Chr6:4551930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B140,B77,C64,C66,D6
`Chr6:4551935`	`GC`	`G`	1bp_deletion	frameshift_variant	4	B129,B138,B25,B49
`Chr6:4551935`	`GC`	`G`	1bp_deletion	CDS_variant	4	B129,B138,B25,B49
`Chr6:4552056`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,C37,D6
`Chr6:4552301`	`T`	`TG`	1bp_insertion	frameshift_variant	1	B24
`Chr6:4552301`	`T`	`TG`	1bp_insertion	CDS_variant	1	B24
`Chr6:4552308`	`AT`	`*`	1bp_deletion	CDS_variant	1	C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767830.1

241 aa

120

241

Nas2_N

PF18265 Nas2_N 12-89 aa

XP_057767831.1

218 aa

109

218

Nas2_N

PF18265 Nas2_N 12-89 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767830.1`	Pfam	`PF18265`	Nas2_N	Domain	12	89	5.6e-23	81.4	Nas2 N_terminal domain
`XP_057767831.1`	Pfam	`PF18265`	Nas2_N	Domain	12	89	4.5e-23	81.7	Nas2 N_terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911847.1
ATGGTGGCGACGAATCTGAAAGCGGAGACGATGAAACTGATGGAGAAGCGGAGTGGAATAGAGGAGGAGATGAATGTCATCATCGAACGCCTCTGCCAGCCCGGCGGCCCTGGCCTCTCCGGCAACCTCGTCGATTTCGAGGGGTTTCCAAGGACAGATATTGACATTCCGACTGTTAGAGCTGACAGGCATAGGCTTGCTGAGTTGCGTAATGATCACAAGGATATAACGGAGAAGATGAGTCAAAACATTCAGCTTCT...

XM_057911848.1
ATGGTGGCGACGAATCTGAAAGCGGAGACGATGAAACTGATGGAGAAGCGGAGTGGAATAGAGGAGGAGATGAATGTCATCATCGAACGCCTCTGCCAGCCCGGCGGCCCTGGCCTCTCCGGCAACCTCGTCGATTTCGAGGGGTTTCCAAGGACAGATATTGACATTCCGACTGTTAGAGCTGACAGGCATAGGCTTGCTGAGTTGCGTAATGATCACAAGGATATAACGGAGAAGATGAGTCAAAACATTCAGCTTCT...

CDS

2 records

下载 CDS FASTA

LOC130988089
ATGGTGGCGACGAATCTGAAAGCGGAGACGATGAAACTGATGGAGAAGCGGAGTGGAATAGAGGAGGAGATGAATGTCATCATCGAACGCCTCTGCCAGCCCGGCGGCCCTGGCCTCTCCGGCAACCTCGTCGATTTCGAGGGGTTTCCAAGGACAGATATTGACATTCCGACTGTTAGAGCTGACAGGCATAGGCTTGCTGAGTTGCGTAATGATCACAAGGATATAACGGAGAAGATGAGTCAAAACATTCAGCTTCT...

Protein

2 records

下载 Protein FASTA

XP_057767830.1
MVATNLKAETMKLMEKRSGIEEEMNVIIERLCQPGGPGLSGNLVDFEGFPRTDIDIPTVRADRHRLAELRNDHKDITEKMSQNIQLLHSAKHTTTTASVKDSGSDAGMSSSLGNYVAIDASSAMDADFNISRPFAVVDEITELSPAAEDGLQLGDQILKFGDVERGENLLQRLAAEAQQKQGEAVPLVVTRQGSLVNLTVTPRTWSGRGLLGYVLFYLCSLTLSNVFSLAYLSLLQVWHTS

XP_057767831.1
MVATNLKAETMKLMEKRSGIEEEMNVIIERLCQPGGPGLSGNLVDFEGFPRTDIDIPTVRADRHRLAELRNDHKDITEKMSQNIQLLHSAKHTTTTASVKDSGSDAGMSSSLGNYVAIDASSAMDADFNISRPFAVVDEITELSPAAEDGLQLGDQILKFGDVERGENLLQRLAAEAQQKQGEAVPLVVTRQGSLVNLTVTPRTWSGRGLLGCHFRIL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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