Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000568`

染色体: Chr06 坐标: 4837483-4840990 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000568`
名称	SmilChr06G000568
描述	uncharacterized SmilChr06G000568
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4837483 - 4840990 / `+`

ID 对照

NCBI Gene ID	`LOC130988112`
GeneID	`130988112`
locus_tag	`-`
NCBI Name	`LOC130988112`
原始查询	`SmilChr06G000568`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829225]; symbol=AT4G30993; hit=AT4G30993; species=arabidopsis; confidence=medium
产物	Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829225]; symbol=AT4G30993; hit=AT4G30993; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G30993` (AT4G30993) Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829225] identity=36.4; qcov=1.06; evalue=1.3e-49; confidence=medium
Rice	`Os06g0183700` - identity=34.3; qcov=1.04; evalue=1.97e-45; confidence=low
GO	GO:0003993 (acid phosphatase activity); GO:0008198 (ferrous iron binding); GO:0008199 (ferric iron binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:130988112

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057767855.1`
2	Secreted	分泌到胞外	0.40000	`XP_057767855.1`
3	Nucleus	细胞核	0.00000	`XP_057767855.1`
4	Chromosome	染色体	0.00000	`XP_057767855.1`
5	Centromere	着丝粒	0.00000	`XP_057767855.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4837862`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B34
`Chr6:4837862`	`GC`	`G`	1bp_deletion	CDS_variant	1	B34
`Chr6:4837864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr6:4838899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:4840099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C28,C48,C73
`Chr6:4840456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911873.1
TAGGTAATGAATTTTATATTATCTGAAGCCATTTACAGGGCCTTTAATCTTCACCGTGAAATTATATGCGACGATCAAGTTATAATAAGCATACCGATCTCATCACCTCACTCGCAGCAAATGCATAGATTTCTGCGAAAATCTGTCTTAAAATGAAGGAAAAATCATGGGCTTGCACTCTCATCACGCAGCTATCTCTCTGCGTTGTAGCTTACGTAGCCATAAATATTGAGAAATTTACTCCTCGAAGCATCTCAAAC...

XM_057911872.1
AGGTAATGAATTTTATATTATCTGAAGCCATTTACAGGGCCTTTAATCTTCACCGTGAAATTATATGCGACGATCAAGTTATAATGTCTGTAAACTATTACTGTGATTTGTGCTAGTGTTATACTTTAAGCATTTTAAAATCAATATCTGAATGCGCGCAGAAGCATACCGATCTCATCACCTCACTCGCAGCAAATGCATAGATTTCTGCGAAAATCTGTCTTAAAATGAAGGAAAAATCATGGGCTTGCACTCTCATC...

CDS

2 records

下载 CDS FASTA

LOC130988112
ATGAAGGAAAAATCATGGGCTTGCACTCTCATCACGCAGCTATCTCTCTGCGTTGTAGCTTACGTAGCCATAAATATTGAGAAATTTACTCCTCGAAGCATCTCAAACCAAGGCAACAGGCAGAATGATGTGTATTTTATGAGTGTTGCTGGCGGCTTTAGACCTGTTGAAGAACAAACCCTATTGCTCCAACAGATGGTGAAGGTACAGAAGACATACAAAGTGCTTTTTGTAGTGGAATTTAGTGAGCTTGGTGAATC...

Protein

2 records

下载 Protein FASTA

XP_057767855.1
MKEKSWACTLITQLSLCVVAYVAINIEKFTPRSISNQGNRQNDVYFMSVAGGFRPVEEQTLLLQQMVKVQKTYKVLFVVEFSELGESDPLLQNATLYPALQNIPWYNSGALTGEGKTYFSKKIEVPHGQTIDIIALDTVLLKDQSTALGNDQIAWLTKTLNESNSDWKIVVGLHQLISSDFNILKVKETRFEPVWNILLQYGVDVYMSSKTCEDNTKDKAIYLTAMNHNVVSKEATGGGFLLHRVSSLEMLMFMVKLSGE...

XP_057767856.1
MKEKSWACTLITQLSLCVVAYVAINIEKFTPRSISNQGNRQNDVYFMSVAGGFRPVEEQTLLLQQMVKVQKTYKVLFVVEFSELGESDPLLQNATLYPALQNIPWYNSGALTGEGKTYFSKKIEVPHGQTIDIIALDTVLLKDQSTALGNDQIAWLTKTLNESNSDWKIVVGLHQLISSDFNILKVKETRFEPVWNILLQYGVDVYMSSKTCEDNTKDKAIYLTAMNHNVVSKEATGGGFLLHRVSSLEMLMFMVKLSGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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