Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000571`

染色体: Chr06 坐标: 4876436-4880506 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000571`
名称	SmilChr06G000571
描述	glycerophosphodiester phosphodiesterase GDPDL6-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4876436 - 4880506 / `-`

ID 对照

NCBI Gene ID	`LOC130988115`
GeneID	`130988115`
locus_tag	`-`
NCBI Name	`LOC130988115`
原始查询	`SmilChr06G000571`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycerophosphodiester phosphodiesterase GDPDL6-like
产物	glycerophosphodiester phosphodiesterase GDPDL6-like
Arabidopsis	`AT5G58170` (SVL5) SHV3-like 5 [Source:NCBI gene (formerly Entrezgene);Acc:835929] identity=50; qcov=0.944; evalue=0; confidence=high
Rice	`Os02g0187400` (OJ1073_F05.25-1) - identity=46.3; qcov=0.925; evalue=0; confidence=high
GO	GO:0006629 (lipid metabolic process); GO:0008889 (glycerophosphodiester phosphodiesterase activity)
KEGG	-
Pfam	PF03009 (GDPD)
InterPro	-
eggNOG	-
NR	GeneID:130988115

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057767858.1`
2	Cell wall	细胞壁	0.40000	`XP_057767858.1`
3	Nucleus	细胞核	0.00000	`XP_057767858.1`
4	Chromosome	染色体	0.00000	`XP_057767858.1`
5	Centromere	着丝粒	0.00000	`XP_057767858.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4877107`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C48,C53
`Chr6:4877161`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr6:4877197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr6:4877362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C46
`Chr6:4877596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B80
`Chr6:4877805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:4878636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B77,C83
`Chr6:4878856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr6:4878988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B111,B47,B53,D4
`Chr6:4879277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B111,B47,B53,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767858.1

737 aa

368

737

GDPD

PF03009 GDPD 358-642 aa

XP_057767859.1

721 aa

360

721

GDPD

PF03009 GDPD 358-642 aa

XP_057767860.1

737 aa

368

737

GDPD

PF03009 GDPD 358-642 aa

XP_057767861.1

737 aa

368

737

GDPD

PF03009 GDPD 358-642 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767858.1`	Pfam	`PF03009`	GDPD	Family	358	642	9e-23	82.4	Glycerophosphoryl diester phosphodiesterase family
`XP_057767859.1`	Pfam	`PF03009`	GDPD	Family	358	642	8.3e-23	82.5	Glycerophosphoryl diester phosphodiesterase family
`XP_057767860.1`	Pfam	`PF03009`	GDPD	Family	358	642	9e-23	82.4	Glycerophosphoryl diester phosphodiesterase family
`XP_057767861.1`	Pfam	`PF03009`	GDPD	Family	358	642	9e-23	82.4	Glycerophosphoryl diester phosphodiesterase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057911876.1
CTCCCATTTTCCCGTTTCCGTTTTCCTTTTCCTTCCCACGCTGCCATAATTCCTCACAGCTTCACTTTTTTTTTTCTTTTTTTTTTCTTTTTTCCCCCAAAAGGGAATACCACTTTTCTCCGTTTAAGACCATCTATAATCCTTTTCTGGGGAGAAATGGTTGGCCATTTGCTTTTGTGTATCTTACTGTTTCTAACCATAGAAGTTAAAGATGGCGCTAAGCTACCACTTGTTGAAAAGAAATTCATGACTCTGAGTGG...

XM_057911875.1
CTCCCATTTTCCCGTTTCCGTTTTCCTTTTCCTTCCCACGCTGCCATAATTCCTCACAGCTTCACTTTTTTTTTTCTTTTTTTTTTCTTTTTTCCCCCAAAAGGGAATACCACTTTTCTCCGTTTAAGACCATCTATAATCCTTTTCTGGGGAGAAATGGTTGGCCATTTGCTTTTGTGTATCTTACTGTTTCTAACCATAGAAGTTAAAGATGGCGCTAAGCTACCACTTGTTGAAAAGAAATTCATGACTCTGAGTGG...

CDS

4 records

下载 CDS FASTA

LOC130988115
ATGGTTGGCCATTTGCTTTTGTGTATCTTACTGTTTCTAACCATAGAAGTTAAAGATGGCGCTAAGCTACCACTTGTTGAAAAGAAATTCATGACTCTGAGTGGTGGTCAGCCGGAGGTTGTAGCGCTAGGTGGATACTCGGGATTCTTCCCTAGTTCAAGCCTGAATGCTTATGACTTTGCTCTTGAGATTAGCATCCCTGGAACAATCCAGTATTGCAACGTGCATTTTTCAAAGGACAACATTGGCTTCTGCGTTGC...

Protein

4 records

下载 Protein FASTA

XP_057767858.1
MVGHLLLCILLFLTIEVKDGAKLPLVEKKFMTLSGGQPEVVALGGYSGFFPSSSLNAYDFALEISIPGTIQYCNVHFSKDNIGFCVAQINLMNTTSIEEFDPKGMKEYKIYEQEVHGYFGLDYPAKVLFDNVTVRQNIFTRSGVYDGSPLVVPSQLFEDRKKIPARVWLNFENDMFYKEHKISAETFLLDILKTVPEFLSSPEIGFLKSMGSKLDKSKTKFIFTFLEPDEVEPTTQKSYGSLIKDLGAIKSFASGIVVPK...

XP_057767859.1
MVGHLLLCILLFLTIEVKDGAKLPLVEKKFMTLSGGQPEVVALGGYSGFFPSSSLNAYDFALEISIPGTIQYCNVHFSKDNIGFCVAQINLMNTTSIEEFDPKGMKEYKIYEQEVHGYFGLDYPAKVLFDNVTVRQNIFTRSGVYDGSPLVVPSQLFEDRKKIPARVWLNFENDMFYKEHKISAETFLLDILKTVPEFLSSPEIGFLKSMGSKLDKSKTKFIFTFLEPDEVEPTTQKSYGSLIKDLGAIKSFASGIVVPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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