当前解析结果
SmilChr06G000577| 统一新 Gene ID | SmilChr06G000577 |
|---|---|
| 名称 | SmilChr06G000577 |
| 描述 | class V chitinase-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 4932525 - 4933898 / + |
| NCBI Gene ID | LOC130988122 |
|---|---|
| GeneID | 130988122 |
| locus_tag | - |
| NCBI Name | LOC130988122 |
| 原始查询 | SmilChr06G000577 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | class V chitinase-like |
| 产物 | class V chitinase-like |
| Arabidopsis | AT4G19810 (ChiC)Glycosyl hydrolase family protein with chitinase insertion domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:827725] identity=58.2; qcov=0.997; evalue=1.93e-153; confidence=high |
| Rice | Os11g0462100- identity=36.4; qcov=0.995; evalue=3.05e-68; confidence=medium |
| GO | GO:0004568 (chitinase activity); GO:0005576 (extracellular region); GO:0005975 (carbohydrate metabolic process); GO:0006032 (chitin catabolic process); GO:0008061 (chitin binding) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00704 (Glyco_hydro_18) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988122 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057767872.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057767872.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057767872.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057767872.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057767872.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:4932644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B29,B52,B69,C44,C45 |
Chr6:4932657 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | C82 |
Chr6:4932657 |
T |
TG |
1bp_insertion | CDS_variant | 1 | C82 |
Chr6:4932663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr6:4932665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,D4 |
Chr6:4932697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B52,C45 |
Chr6:4932711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr6:4932742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B50,B72,C54 |
Chr6:4932884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:4932938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr6:4932960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B127,B4,C38,D9 |
Chr6:4933033 |
G |
A |
EMS_canonical_SNV | stop_gained | 132 | A11,A16,A18,A19,A20,A22,A23,A24,A25,A3,A4,A6,B1,B102,B103,B105,B108,B111,B112,B113,B118,B119,B12,B123,B124,B126,B127,B128,B130,B131,B134,B138,B139,B16,B18,B19,B2,B20,B22,B24,B26,B27,B29,B3,B35,B36,B38,B39,B4,B40,B45,B46,B47,B48,B49,B5,B53,B54,B55,B59,B60,B61,B66,B7,B72,B76,B79,B80,B81,B82,B83,B87,B89,B90,B92,B93,B94,B95,B98,B99,C1,C10,C11,C12,C13,C15,C19,C2,C21,C22,C23,C25,C26,C33,C35,C36,C38,C40,C41,C45,C48,C52,C53,C54,C55,C57,C58,C59,C61,C64,C65,C66,C69,C7,C70,C71,C72,C75,C76,C79,C80,C81,C82,C83,C86,D1,D10,D11,D3,D4,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767872.1PF00704
Glyco_hydro_18 32-352 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767872.1 |
Pfam | PF00704 |
Glyco_hydro_18 | Domain | 32 | 352 | 7e-73 | 246.8 | Glycosyl hydrolases family 18 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。