Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000581`

染色体: Chr06 坐标: 4981630-4985481 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000581`
名称	SmilChr06G000581
描述	F-box protein CPR1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4981630 - 4985481 / `-`

ID 对照

NCBI Gene ID	`LOC130988126`
GeneID	`130988126`
locus_tag	`-`
NCBI Name	`LOC130988126`
原始查询	`SmilChr06G000581`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein CPR1-like
产物	F-box protein CPR1-like
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=29.7; qcov=0.909; evalue=6.76e-36; confidence=low
Rice	`Os12g0164300` (OsFbox646) - identity=26.1; qcov=0.791; evalue=1.66e-22; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:130988126

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767882.1`
2	Cytoplasm	细胞质	0.40000	`XP_057767882.1`
3	Cytosol	细胞质基质	0.20000	`XP_057767882.1`
4	Chromosome	染色体	0.00000	`XP_057767882.1`
5	Centromere	着丝粒	0.00000	`XP_057767882.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4982178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr6:4984207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,D11
`Chr6:4984211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr6:4984303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,C20
`Chr6:4984318`	`T`	`TTA`	2bp_insertion	frameshift_variant	7	B111,B125,B4,B60,B70,C50,C52
`Chr6:4984331`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B60,C37,C50
`Chr6:4984359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr6:4984526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr6:4984732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:4984748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,C20,C82
`Chr6:4985087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B24,B66,B76,C62
`Chr6:4985090`	`GGA`	`G`	2bp_deletion	frameshift_variant	64	A18,A23,A25,A3,A8,B1,B100,B104,B105,B107,B109,B110,B112,B124,B127,B128,B133,B18,B21,B23,B26,B27,B30,B38,B39,B4,B49,B5,B51,B55,B56,B60,B65,B7,B84,B91,B96,B98,C1,C12,C14,C16,C19,C23,C24,C26,C34,C36,C46,C48,C53,C55,C61,C70,C77,C79,C80,C82,C86,C9,D11,D2,D3,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767882.1

407 aa

204

407

F-box

FBA_3

FBA_1

PF00646 F-box 2-42 aa PF08268 FBA_3 103-280 aa PF07734 FBA_1 106-295 aa

XP_057767883.1

407 aa

204

407

F-box

FBA_3

FBA_1

PF00646 F-box 2-42 aa PF08268 FBA_3 103-280 aa PF07734 FBA_1 106-295 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767882.1`	Pfam	`PF00646`	F-box	Domain	2	42	1.9e-08	34.6	F-box domain
`XP_057767882.1`	Pfam	`PF08268`	FBA_3	Repeat	103	280	4.6e-15	56.2	F-box associated beta propeller domain
`XP_057767882.1`	Pfam	`PF07734`	FBA_1	Repeat	106	295	2.8e-13	50.3	F-box associated beta propeller domain
`XP_057767883.1`	Pfam	`PF00646`	F-box	Domain	2	42	1.9e-08	34.6	F-box domain
`XP_057767883.1`	Pfam	`PF08268`	FBA_3	Repeat	103	280	4.6e-15	56.2	F-box associated beta propeller domain
`XP_057767883.1`	Pfam	`PF07734`	FBA_1	Repeat	106	295	2.8e-13	50.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911900.1
GACATAAATTTTTATTATTCATTATTTTATATGGATAAATTTATCCATCAAAGTAAAGGGAGTCTCATAGAAAAATATAGCATATGACTTAAATACAAATATAAGCAGTAATATATTTTGAAGCAGTAGGCGGCGGCGCCTGTGAGCCTCCGAATATGTCCGATGTTCCAAACGATGTTCTCCGCGAAATACTGATCCGGGTACCGGCAGAATCTGTCCTCACCTCAAGGGCCGTCTGCAAAGCGTGGAAACTCACCATC...

XM_057911899.1
GACATAAATTTTTATTATTCATTATTTTATATGGATAAATTTATCCATCAAAGTAAAGGGAGTCTCATAGAAAAATATAGCATATGACTTAAATACAAATATAAGCAGTAATATATTTTGAAGCAGTAGGCGGCGGCGCCTGTGAGCCTCCGAATATGTCCGATGTTCCAAACGATGTTCTCCGCGAAATACTGATCCGGGTACCGGCAGAATCTGTCCTCACCTCAAGGGCCGTCTGCAAAGCGTGGAAACTCACCATC...

CDS

2 records

下载 CDS FASTA

LOC130988126
ATGTCCGATGTTCCAAACGATGTTCTCCGCGAAATACTGATCCGGGTACCGGCAGAATCTGTCCTCACCTCAAGGGCCGTCTGCAAAGCGTGGAAACTCACCATCGACGATCCCTCCTTCCTTCACTTCCACTCCACAAACCTACAACATTGCTCTCACCCCACCATCCTCATCAGAGAGTCCAAAGGCGGTGGAATCACTTTTCTTTCTCTCGACCGCCTAAACCCCATTGATTCCCTCCAACAAATCGACCTACACCC...

Protein

2 records

下载 Protein FASTA

XP_057767882.1
MSDVPNDVLREILIRVPAESVLTSRAVCKAWKLTIDDPSFLHFHSTNLQHCSHPTILIRESKGGGITFLSLDRLNPIDSLQQIDLHPFKQLIHHGLPRLLQPPAASCHGLILISHRRNWRNWAIWNPLTQTLHELPQPDADLQSVSGRSASVGFGYDPAAEDYKVVRIDKLHQGGVITYDRTLVYSMKLRNWRRIGDFPYVIASAGNGVFLNGALHWQSRDGIAALDLGTEQFSLLPRPHLMSPSPARYTSELLDALNGY...

XP_057767883.1
MSDVPNDVLREILIRVPAESVLTSRAVCKAWKLTIDDPSFLHFHSTNLQHCSHPTILIRESKGGGITFLSLDRLNPIDSLQQIDLHPFKQLIHHGLPRLLQPPAASCHGLILISHRRNWRNWAIWNPLTQTLHELPQPDADLQSVSGRSASVGFGYDPAAEDYKVVRIDKLHQGGVITYDRTLVYSMKLRNWRRIGDFPYVIASAGNGVFLNGALHWQSRDGIAALDLGTEQFSLLPRPHLMSPSPARYTSELLDALNGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器