Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000582`

染色体: Chr06 坐标: 4987570-4991696 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000582`
名称	SmilChr06G000582
描述	ATPase 8, plasma membrane-type
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	4987570 - 4991696 / `+`

ID 对照

NCBI Gene ID	`LOC130988128`
GeneID	`130988128`
locus_tag	`-`
NCBI Name	`LOC130988128`
原始查询	`SmilChr06G000582`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATPase 8, plasma membrane-type
产物	ATPase 8%2C plasma membrane-type
Arabidopsis	`AT3G42640` (HA8) H[+]-ATPase 8 [Source:NCBI gene (formerly Entrezgene);Acc:823281] identity=83.8; qcov=1; evalue=0; confidence=high
Rice	`Os04g0656100` (AHA7) - identity=80.7; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0008553 (P-type proton-exporting transporter activity); GO:0016887 (ATP hydrolysis activity); GO:0051453 (regulation of intracellular pH); GO:0120029 (proton export across plasma membrane)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00122 (E1-E2_ATPase); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase)
InterPro	-
eggNOG	-
NR	GeneID:130988128

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057767885.1`
2	Vacuole	液泡	0.20000	`XP_057767885.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057767885.1`
4	Nucleus	细胞核	0.00000	`XP_057767885.1`
5	Chromosome	染色体	0.00000	`XP_057767885.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:4988181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B118,B25,C6,C63
`Chr6:4988240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,A5,A7,D5
`Chr6:4988352`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B61,C39,C56
`Chr6:4988388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B140,C28,C73
`Chr6:4988439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B61,B82,B99,C72,C75
`Chr6:4988458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr6:4988592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr6:4988613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B134,B37,B74,B75
`Chr6:4988673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,A5,B50,C5
`Chr6:4988709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B137
`Chr6:4988818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:4988960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767885.1

948 aa

474

948

Cation_ATPase_N

E1-E2_ATPase

Hydrolase

PF00690 Cation_ATPase_N 19-82 aa PF00122 E1-E2_ATPase 132-230 aa PF00702 Hydrolase 326-603 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767885.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	19	82	1.8e-15	57.0	Cation transporter/ATPase, N-terminus
`XP_057767885.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	132	230	1e-32	112.7	P-type ATPase actuator domain
`XP_057767885.1`	Pfam	`PF00702`	Hydrolase	Domain	326	603	1.5e-14	55.5	haloacid dehalogenase-like hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911902.1
TATTGCTTAGCAATCACAAAGCAATAAGGAAAGAGATAACTAGAGACTTAATCTCATTATCTCTTTCCACTTGAAAAAAAAAAAAAAAAAGCCTATCATGGCTCCCGACATTTCCTTAGAAGATATAAGAAATGAAACAGCCGATCTTGAGAAGATCCCCGTTGAGGAAGTGTTCACAGCGTTGAAATGTACAAAGGAGGGATTGAGCTCAGCCGAAGGAGAAAAACGGCTCCATATATTCGGGCCGAATAAGTTGGAGG...

CDS

1 records

下载 CDS FASTA

LOC130988128
ATGGCTCCCGACATTTCCTTAGAAGATATAAGAAATGAAACAGCCGATCTTGAGAAGATCCCCGTTGAGGAAGTGTTCACAGCGTTGAAATGTACAAAGGAGGGATTGAGCTCAGCCGAAGGAGAAAAACGGCTCCATATATTCGGGCCGAATAAGTTGGAGGAGAAGAAGGATAGCAAGTTTCTTAAATTCTTAGGCTTCATGTGGAATCCTCTTTCTTGGGTCATGGAGATTGCTGCTATCATGGCTATTGCTTTGGC...

Protein

1 records

下载 Protein FASTA

XP_057767885.1
MAPDISLEDIRNETADLEKIPVEEVFTALKCTKEGLSSAEGEKRLHIFGPNKLEEKKDSKFLKFLGFMWNPLSWVMEIAAIMAIALANGGGKPPDWQDFVGIMVLLVINSTISFIEENNAGNAASALMAGLAPKCKVLRDGKWCEHDASILVPGDLISVKLGDIVPADARLLDGDPLKIDQSALTGESLPVTRHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQQVLTAIGNFCICSIAVGMVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器