Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000628`

染色体: Chr06 坐标: 5536205-5538511 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000628`
名称	SmilChr06G000628
描述	probable flavin-containing monooxygenase 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	5536205 - 5538511 / `-`

ID 对照

NCBI Gene ID	`LOC130988178`
GeneID	`130988178`
locus_tag	`-`
NCBI Name	`LOC130988178`
原始查询	`SmilChr06G000628`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable flavin-containing monooxygenase 1
产物	probable flavin-containing monooxygenase 1
Arabidopsis	`AT1G19250` (FMO1) flavin-dependent monooxygenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838508] identity=38.9; qcov=0.998; evalue=1.36e-118; confidence=medium
Rice	`Os04g0223500` - identity=51.1; qcov=0.994; evalue=0; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	smil00430 (Taurine and hypotaurine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00743 (FMO-like); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8)
InterPro	-
eggNOG	-
NR	GeneID:130988178

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057767942.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057767942.1`
3	Lipid droplet	脂滴	0.40000	`XP_057767942.1`
4	Nucleus	细胞核	0.00000	`XP_057767942.1`
5	Chromosome	染色体	0.00000	`XP_057767942.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:5536361`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B104
`Chr6:5536361`	`GC`	`G`	1bp_deletion	CDS_variant	1	B104
`Chr6:5536369`	`T`	`TCC`	2bp_insertion	frameshift_variant	25	A15,A21,B10,B120,B125,B137,B138,B29,B31,B36,B46,B48,B70,B76,B91,B97,C15,C39,C53,C70,C75,C77,C9,D11,D7
`Chr6:5536374`	`CTT`	`C`	2bp_deletion	frameshift_variant	27	A15,A21,B10,B120,B123,B125,B137,B138,B29,B31,B36,B46,B48,B66,B70,B76,B91,B97,C15,C39,C53,C70,C75,C77,C9,D11,D7
`Chr6:5536408`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr6:5536428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,B136
`Chr6:5536436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B36,B97
`Chr6:5536524`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B27,B41,C14,C2
`Chr6:5536526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:5536528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr6:5536554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B133,B58,B95,C27
`Chr6:5536568`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767942.1

520 aa

260

520

FMO-like

Pyr_redox_2

NAD_binding_8

Lys_Orn_oxgnase

PF00743 FMO-like 3-498 aa PF07992 Pyr_redox_2 4-241 aa PF13450 NAD_binding_8 7-42 aa PF13434 Lys_Orn_oxgnase 132-247 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767942.1`	Pfam	`PF00743`	FMO-like	Family	3	498	2.3e-41	142.6	Flavin-binding monooxygenase-like
`XP_057767942.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	4	241	1.7e-10	41.5	Pyridine nucleotide-disulphide oxidoreductase
`XP_057767942.1`	Pfam	`PF13450`	NAD_binding_8	Domain	7	42	1.1e-08	35.9	NAD(P)-binding Rossmann-like domain
`XP_057767942.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	132	247	5e-10	39.7	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057911959.1
TTGTTGGAAAAACAAATGGTACCAAAATAGGCATCAATAATTAGTATGGGAAGCAGGCCACAATGTGGTATTTTTTATTTTTCTTTTTTGTAGTTTTGCTTATAATAGTAAATATATGTGTCCAATTCTCAACATTACCGTGGATGAGTCGGCCATAAAAGTGAAGCACAACCTCCAACTTATCCGATTAAATTACAATAAGGCATGGAGAAACGAGTCGCCATCGTGGGCGCCGGAATCAGTGGCCTCCTGGCCTGCAA...

CDS

1 records

下载 CDS FASTA

LOC130988178
ATGGAGAAACGAGTCGCCATCGTGGGCGCCGGAATCAGTGGCCTCCTGGCCTGCAAATACGCGGCGGCGAAAGGCTTCGCTCCGACTGTTTTCGAGGAGCAAGATCACGTGGGCGGACTGTGGAACCATACCTTGGAGTCCACCACGCTTCAAGTTCCCAAACAGCTCTACAAGTTTTCCGACTTTCCATGGCCTTCTTCCGTCCAAGAAATGCTTCCCCACAACACGCAGCTCACGGAGTATCTGCAATCTTACGCTCG...

Protein

1 records

下载 Protein FASTA

XP_057767942.1
MEKRVAIVGAGISGLLACKYAAAKGFAPTVFEEQDHVGGLWNHTLESTTLQVPKQLYKFSDFPWPSSVQEMLPHNTQLTEYLQSYARKFQLLQYVNFKCKVINVDYVGESEKEMECWDLWGGDGKAFGSKGKWILRVSHAGDDSIKEYEAEFLVLCIGRFSGLPNVPEFAPGYGGDVFSGKVMHSMNFANMDNSAAAEFIKGKRVVVIGSGKSAVDIAFECANVNGRDNPCTMIQRRIHWMLPHDAKPWGLSLGFLCFTR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器