当前解析结果
SmilChr06G000636| 统一新 Gene ID | SmilChr06G000636 |
|---|---|
| 名称 | SmilChr06G000636 |
| 描述 | uncharacterized SmilChr06G000636 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 5624047 - 5634236 / + |
| NCBI Gene ID | LOC130988182 |
|---|---|
| GeneID | 130988182 |
| locus_tag | - |
| NCBI Name | LOC130988182 |
| 原始查询 | SmilChr06G000636 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GTP-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:820382]; symbol=emb2738; hit=AT3G12080; species=arabidopsis; confidence=high |
| 产物 | GTP-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:820382]; symbol=emb2738; hit=AT3G12080; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G12080 (emb2738)GTP-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:820382] identity=77.5; qcov=0.857; evalue=0; confidence=high |
| Rice | Os11g0638000- identity=77.3; qcov=0.48; evalue=1.02e-169; confidence=medium |
| GO | GO:0005525 (GTP binding); GO:0009507 (chloroplast) |
| KEGG | - |
| Pfam | PF01926 (MMR_HSR1); PF02421 (FeoB_N); PF14714 (KH_dom-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988182 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057767947.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057767947.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767947.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767947.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767947.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:5624158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B23,B46,C61,D3 |
Chr6:5624185 |
TC |
T |
1bp_deletion | frameshift_variant | 38 | A10,A15,B102,B103,B105,B107,B120,B121,B16,B3,B32,B45,B5,B59,B6,B61,B62,B65,B84,B89,B95,B97,C10,C13,C22,C23,C36,C39,C4,C40,C52,C56,C67,C73,C79,C81,C83,D8 |
Chr6:5624395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr6:5625722 |
CG |
C |
1bp_deletion | frameshift_variant | 6 | A13,C13,C17,C22,C27,C56 |
Chr6:5625813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,C2,C26 |
Chr6:5625849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B39,B94,B99,C41,C62 |
Chr6:5626065 |
AGG |
A |
2bp_deletion | frameshift_variant | 9 | B11,B123,B40,B45,B89,B94,C67,C79,C85 |
Chr6:5626069 |
C |
CTT |
2bp_insertion | frameshift_variant | 10 | B11,B123,B40,B45,B89,B94,C36,C67,C79,C85 |
Chr6:5626080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr6:5626110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B23,B46,C61,D3 |
Chr6:5627253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr6:5629492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767947.1PF02421
FeoB_N 139-210 aa
PF01926
MMR_HSR1 139-282 aa
PF02421
FeoB_N 342-508 aa
PF01926
MMR_HSR1 343-464 aa
PF14714
KH_dom-like 523-604 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767947.1 |
Pfam | PF02421 |
FeoB_N | Domain | 139 | 210 | 2.9e-24 | 86.1 | Ferrous iron transport protein B |
XP_057767947.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 139 | 282 | 2.2e-53 | 179.9 | 50S ribosome-binding GTPase |
XP_057767947.1 |
Pfam | PF02421 |
FeoB_N | Domain | 342 | 508 | 2.9e-24 | 86.1 | Ferrous iron transport protein B |
XP_057767947.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 343 | 464 | 2.2e-53 | 179.9 | 50S ribosome-binding GTPase |
XP_057767947.1 |
Pfam | PF14714 |
KH_dom-like | Domain | 523 | 604 | 4e-31 | 107.9 | KH-domain-like of EngA bacterial GTPase enzymes, C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。