Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000659`

染色体: Chr06 坐标: 5803680-5805880 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000659`
名称	SmilChr06G000659
描述	chalcone--flavanone isomerase-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	5803680 - 5805880 / `+`

ID 对照

NCBI Gene ID	`LOC130988204`
GeneID	`130988204`
locus_tag	`-`
NCBI Name	`LOC130988204`
原始查询	`SmilChr06G000659`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chalcone--flavanone isomerase-like
产物	chalcone--flavanone isomerase-like
Arabidopsis	`AT3G55120` (TT5) Chalcone-flavanone isomerase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824678] identity=58.5; qcov=1.04; evalue=2.4e-87; confidence=high
Rice	`Os03g0819600` (gh1) - identity=56; qcov=1.03; evalue=4.99e-82; confidence=high
GO	GO:0009813 (flavonoid biosynthetic process); GO:0045430 (chalcone isomerase activity)
KEGG	smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02431 (Chalcone)
InterPro	-
eggNOG	-
NR	GeneID:130988204

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057767973.1`
2	Cytoplasm	细胞质	0.20000	`XP_057767973.1`
3	Mitochondrion	线粒体	0.20000	`XP_057767975.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057767975.1`
5	Nucleus	细胞核	0.00000	`XP_057767973.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:5804876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B7,C14
`Chr6:5804878`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr6:5804923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,C41,D1,D7
`Chr6:5804925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,C16,D2
`Chr6:5805060`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B60,B87
`Chr6:5805088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:5805130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,C1
`Chr6:5805152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr6:5805157`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B132,B93,C21
`Chr6:5805169`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B120,C74
`Chr6:5805183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C82
`Chr6:5805186`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,C12,C14,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767973.1

225 aa

112

225

Chalcone

PF02431 Chalcone 12-214 aa

XP_057767974.1

225 aa

112

225

Chalcone

PF02431 Chalcone 12-214 aa

XP_057767975.1

209 aa

104

209

Chalcone

PF02431 Chalcone 12-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767973.1`	Pfam	`PF02431`	Chalcone	Domain	12	214	3.1e-96	321.3	Chalcone-flavanone isomerase
`XP_057767974.1`	Pfam	`PF02431`	Chalcone	Domain	12	214	3.1e-96	321.3	Chalcone-flavanone isomerase
`XP_057767975.1`	Pfam	`PF02431`	Chalcone	Domain	12	198	2.1e-81	272.9	Chalcone-flavanone isomerase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057911990.1
TAGCATTCTCCATATGAAATTTTGAAACCTTTTCTTGCAGATTAGTTTTTCTATACTGAATAAGATCTACTTTTTTTTTTCGTTTATTAGATTTTCATTTTTAAATTTTTAGTTTTTTTAATTTTCTCCATGTTTAAAATTTCTTGCTCAATGTCAAATTTCCACCCCGTTATTTTTGTACTGATTAAGATCTATTTTTTTTCGTTTATTAGTTTTTTTAATTTTTAATTTCTTATATTTTTTTTGTTTTTACATTATCA...

XM_057911992.1
TAGCATTCTCCATATGAAATTTTGAAACCTTTTCTTGCAGATTAGTTTTTCTATACTGAATAAGATCTACTTTTTTTTTTCGTTTATTAGATTTTCATTTTTAAATTTTTAGTTTTTTTAATTTTCTCCATGTTTAAAATTTCTTGCTCAATGTCAAATTTCCACCCCGTTATTTTTGTACTGATTAAGATCTATTTTTTTTCGTTTATTAGTTTTTTTAATTTTTAATTTCTTATATTTTTTTTGTTTTTACATTATCA...

CDS

3 records

下载 CDS FASTA

LOC130988204
ATGTCTGCAACGCCAACCGTCGCACAGCTCCAAGTGGAATCCGTGGTATTCCCACCCACAGTGAAGCCACCGGGCTCCGACAAGACGTTATTCCTCGGCGGCGCAGGGGTGCGAGGGATGGAGATCCAAGGGAACTTCGTCAAATTCACCGCCATCGCCGTCTACATGGAGGGCACCGCCATCCCCGCGCTCGCGCCCAAGTGGAGCGCCAAAACCGTCGATGAAATGGCCGATTCCGCCGACTTCATCCGCGAAATCAT...

Protein

3 records

下载 Protein FASTA

XP_057767973.1
MSATPTVAQLQVESVVFPPTVKPPGSDKTLFLGGAGVRGMEIQGNFVKFTAIAVYMEGTAIPALAPKWSAKTVDEMADSADFIREIIAGPFEKLTKVTMILPLTGQQYSEKVAENCTAYWKAVGKYTDAEGKAVEEFLQVFKDESFSPGASILFTQSPAGSLTIAFSKDGSIPEQGKAVIENKLLAEAILESIIGKQGVSPTARQSLAARVSELLKQTSLAAEAQ

XP_057767974.1
MSATPTVAQLQVESVVFPPTVKPPGSDKTLFLGGAGVRGMEIQGNFVKFTAIAVYMEGTAIPALAPKWSAKTVDEMADSADFIREIIAGPFEKLTKVTMILPLTGQQYSEKVAENCTAYWKAVGKYTDAEGKAVEEFLQVFKDESFSPGASILFTQSPAGSLTIAFSKDGSIPEQGKAVIENKLLAEAILESIIGKQGVSPTARQSLAARVSELLKQTSLAAEAQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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