当前解析结果
SmilChr06G000664| 统一新 Gene ID | SmilChr06G000664 |
|---|---|
| 名称 | SmilChr06G000664 |
| 描述 | pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 5837541 - 5839097 / - |
| NCBI Gene ID | LOC130988210 |
|---|---|
| GeneID | 130988210 |
| locus_tag | - |
| NCBI Name | LOC130988210 |
| 原始查询 | SmilChr06G000664 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like |
| 产物 | pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like |
| Arabidopsis | AT3G26040 (AT3G26040)HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822201] identity=30.5; qcov=1.03; evalue=2.38e-60; confidence=low |
| Rice | Os04g0500700 (OsHCT1)hydroxycinnamoyltransferase 1-like [Source:NCBI gene (formerly Entrezgene);Acc:4336306] identity=26.6; qcov=0.916; evalue=3.09e-30; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988210 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057767979.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057767979.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057767979.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767979.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767979.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:5837805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr6:5837819 |
ACG |
A |
2bp_deletion | frameshift_variant | 14 | A1,A13,A22,B11,B122,B123,B128,B37,B54,B6,C21,C50,C67,C69 |
Chr6:5837831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C28,C46 |
Chr6:5837887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,C21,C69 |
Chr6:5837927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:5837991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:5838246 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr6:5838336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr6:5838395 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B1,B13,C28 |
Chr6:5838468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:5838520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B77,C27 |
Chr6:5838537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B77,C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767979.1PF02458
Transferase 1-419 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767979.1 |
Pfam | PF02458 |
Transferase | Family | 1 | 419 | 1.3e-66 | 225.8 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。