当前解析结果
SmilChr06G000666| 统一新 Gene ID | SmilChr06G000666 |
|---|---|
| 名称 | SmilChr06G000666 |
| 描述 | uncharacterized SmilChr06G000666 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 5855128 - 5859600 / + |
| NCBI Gene ID | LOC130990405 |
|---|---|
| GeneID | 130990405 |
| locus_tag | - |
| NCBI Name | LOC130990405 |
| 原始查询 | SmilChr06G000666 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=33.3; qcov=0.085; evalue=9.83e-17; confidence=weak |
| Rice | Os12g0142900- identity=31.2; qcov=0.266; evalue=1.29e-63; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990405 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057770626.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057770626.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057770626.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770626.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770626.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:5855154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B41 |
Chr6:5855178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B66,B76,C17 |
Chr6:5855183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr6:5855197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr6:5855199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,C44 |
Chr6:5855202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B42,B50,C17,C35 |
Chr6:5855213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,C23 |
Chr6:5855254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B57,B85 |
Chr6:5855264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,B83,C12 |
Chr6:5855268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,B91,C17,C87 |
Chr6:5855271 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B114,C33,C75 |
Chr6:5855271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,C33,C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770626.1PF00078
RVT_1 507-667 aa
PF17919
RT_RNaseH_2 730-827 aa
PF17917
RT_RNaseH 756-859 aa
PF00075
RNase_H 909-1030 aa
PF13456
RVT_3 911-1030 aa
PF17921
Integrase_H2C2 1130-1183 aa
PF00665
rve 1203-1298 aa
PF31073
DUF8803 1425-1489 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770626.1 |
Pfam | PF00078 |
RVT_1 | Domain | 507 | 667 | 8.8e-35 | 121.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057770626.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 730 | 827 | 2.1e-23 | 83.0 | RNase H-like domain found in reverse transcriptase |
XP_057770626.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 756 | 859 | 1.5e-23 | 83.7 | RNase H-like domain found in reverse transcriptase |
XP_057770626.1 |
Pfam | PF00075 |
RNase_H | Domain | 909 | 1030 | 3.4e-08 | 34.5 | RNase H |
XP_057770626.1 |
Pfam | PF13456 |
RVT_3 | Domain | 911 | 1030 | 3.1e-20 | 73.0 | Reverse transcriptase-like |
XP_057770626.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1130 | 1183 | 7e-09 | 36.4 | Integrase zinc binding domain |
XP_057770626.1 |
Pfam | PF00665 |
rve | Domain | 1203 | 1298 | 2.2e-12 | 47.8 | Integrase core domain |
XP_057770626.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1425 | 1489 | 7.5e-13 | 48.8 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。