Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000686`

染色体: Chr06 坐标: 6064857-6073005 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000686`
名称	SmilChr06G000686
描述	probable sucrose-phosphate synthase 1
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	6064857 - 6073005 / `+`

ID 对照

NCBI Gene ID	`LOC130988232`
GeneID	`130988232`
locus_tag	`-`
NCBI Name	`LOC130988232`
原始查询	`SmilChr06G000686`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable sucrose-phosphate synthase 1
产物	probable sucrose-phosphate synthase 1
Arabidopsis	`AT5G20280` (SPS1F) sucrose phosphate synthase 1F [Source:NCBI gene (formerly Entrezgene);Acc:832150] identity=74.8; qcov=0.999; evalue=0; confidence=high
Rice	`Os08g0301500` (OsSPS8) - identity=67.5; qcov=1.01; evalue=0; confidence=high
GO	GO:0005985 (sucrose metabolic process); GO:0016157 (sucrose synthase activity); GO:0046524 (sucrose-phosphate synthase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00534 (Glycos_transf_1); PF00862 (GT-B_Sucrose_synth); PF05116 (S6PP); PF13692 (Glyco_trans_1_4)
InterPro	-
eggNOG	-
NR	GeneID:130988232

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057768006.1`
2	Cytosol	细胞质基质	0.60000	`XP_057768006.1`
3	Cell membrane	细胞膜	0.20000	`XP_057768005.1`
4	Chloroplast	叶绿体	0.20000	`XP_057768005.1`
5	Chloroplast membrane	叶绿体膜	0.20000	`XP_057768005.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:6067187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,D7
`Chr6:6067202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:6067356`	`C`	`T`	EMS_canonical_SNV	stop_gained	26	B100,B101,B103,B114,B139,B25,B35,B49,B57,B73,B85,B91,C1,C15,C17,C23,C25,C41,C49,C56,C57,C65,C76,C79,C83,C84
`Chr6:6067589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B80
`Chr6:6067751`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr6:6068788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:6068840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr6:6070344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr6:6072650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B80
`Chr6:6072656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,B24
`Chr6:6072692`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B4,C37,C74
`Chr6:6072818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,A23,B70,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768005.1

1056 aa

528

1056

GT-B_Sucrose_synth

Glycos_transf_1

Glyco_trans_1_4

S6PP

PF00862 GT-B_Sucrose_synth 167-434 aa PF00534 Glycos_transf_1 470-643 aa PF13692 Glyco_trans_1_4 475-632 aa PF05116 S6PP 774-1003 aa

XP_057768006.1

875 aa

438

875

GT-B_Sucrose_synth

Glycos_transf_1

Glyco_trans_1_4

S6PP

PF00862 GT-B_Sucrose_synth 7-254 aa PF00534 Glycos_transf_1 289-462 aa PF13692 Glyco_trans_1_4 294-451 aa PF05116 S6PP 593-822 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768005.1`	Pfam	`PF00862`	GT-B_Sucrose_synth	Domain	167	434	3.2e-12	46.6	Sucrose synthase first GT-B domain
`XP_057768005.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	470	643	1.7e-20	74.0	Glycosyl transferases group 1
`XP_057768005.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	475	632	1.3e-14	55.3	Glycosyl transferases group 1
`XP_057768005.1`	Pfam	`PF05116`	S6PP	Family	774	1003	2.2e-13	51.1	Sucrose-6F-phosphate phosphohydrolase
`XP_057768006.1`	Pfam	`PF00862`	GT-B_Sucrose_synth	Domain	7	254	3e-09	36.9	Sucrose synthase first GT-B domain
`XP_057768006.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	289	462	1.2e-20	74.4	Glycosyl transferases group 1
`XP_057768006.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	294	451	9.4e-15	55.8	Glycosyl transferases group 1
`XP_057768006.1`	Pfam	`PF05116`	S6PP	Family	593	822	1.5e-13	51.6	Sucrose-6F-phosphate phosphohydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912022.1
TATTAACACAAAAAAGTTAACTAGCGACTACTCCTATTAGTATTTCAAATAATAATCTTCAAACATTCAAATTCATAATCCCGAAACGTAATAAACAAGTGCTCTCTCTCTCAATATTCCCAGAATCTTTCACTCTCTCTCTACAATTTCTTTTTATTTAGGTGTCACTCATCAGCTCCAGAAACATCCTCTCCCTGTCTCCCATCTCCCTCTCTCTCTACACACACTGATCATCATCAATTGCGCAAACAAAACAGAAG...

XM_057912023.1
GGGATGTAGTAAGTGACCTTTCATCTCATGGAGAAAGCAATAAAGGTCGCCTGCCTAGAATCAGTTCAGTTGAAACCATGGAGGCCTGGGCTAGTCAACAGAAGGGGAAAAAGTTATACATTGTATTGATTAGACTCTTGCAGCCTTCATGGTTTGATACGTGGTGAAAACATGGAGCTTGGCCGTGATTCTGATACTGGTGGCCAGGTAAAGTATGTTGTTGAACTGGCAAGAGCTTTGGGTTCAATGCCAGGTGTATA...

CDS

2 records

下载 CDS FASTA

LOC130988232
ATGGCGGGAAATGATTGGATAAACAGCTACTTGGAGGCGATTCTAGATGTTGGCCCCGGCATCGACGAAGCCAAGTCATCTCTGCTGCTGCGTGAGAGGGGGAGGTTCAGCCCTACCAGATACTTCGTTGAAGAGGTCATTACGGGATTCGACGAGACCGACTTCCACCGATCATGGCTTCGAGCGCAGGCGACGCGGAGTCCGCAGGAGAGGAACACCAGGCTGGAGAACATGTGCTGGCGGATTTGGAATTTGGCTCG...

LOC130988232
ATGGAGCTTGGCCGTGATTCTGATACTGGTGGCCAGGTAAAGTATGTTGTTGAACTGGCAAGAGCTTTGGGTTCAATGCCAGGTGTATATCGTGTTGATCTACTTACTAGACAAGTATCATCACCGGAAGTAGACTGCAGCTACGGTGAACCCACGGAGATGCTGCCACCGCGAAATTATGAGGGCTTGATGGATGAGATGGGGGAGAGTAGTGGTGCTTACATAGTTCGGATCCCTTTTGGGCCGAAAGATAAATATAT...

Protein

2 records

下载 Protein FASTA

XP_057768005.1
MAGNDWINSYLEAILDVGPGIDEAKSSLLLRERGRFSPTRYFVEEVITGFDETDFHRSWLRAQATRSPQERNTRLENMCWRIWNLARQKKQLEGEEAQRKNKRRLERERGRREAVADMSEELSEGEKGDVVSDLSSHGESNKGRLPRISSVETMEAWASQQKGKKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPEVDCSYGEPTEMLPPRNYEGLMDEMGESSGAYIVRIP...

XP_057768006.1
MELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPEVDCSYGEPTEMLPPRNYEGLMDEMGESSGAYIVRIPFGPKDKYIQKELLWPYIPEFVDGALNHIIQMSKVLGEQIANGHPVWPVAIHGHYADAGDSAALLSGALNVPMLFTGHSLGRDKLEQLLRQGRVSRDEINSTYKIMRRIEAEELSLDASELVITSTRQEIEEQWRLYDGFDPILERKLRARIKRNVSCYGRFMPRMVVIPPGMEFHHIIPHD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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