Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000713`

染色体: Chr06 坐标: 6446400-6458482 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000713`
名称	SmilChr06G000713
描述	uncharacterized SmilChr06G000713
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	6446400 - 6458482 / `-`

ID 对照

NCBI Gene ID	`LOC130988263`
GeneID	`130988263`
locus_tag	`-`
NCBI Name	`LOC130988263`
原始查询	`SmilChr06G000713`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:823149]; symbol=AT3G33530; hit=AT3G33530; species=arabidopsis; confidence=high
产物	Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:823149]; symbol=AT3G33530; hit=AT3G33530; species=arabidopsis; confidence=high
Arabidopsis	`AT3G33530` (AT3G33530) Transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:823149] identity=63.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0137000` - identity=67.6; qcov=0.562; evalue=0; confidence=medium
GO	GO:0005515 (protein binding); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF23751 (Beta-prop_WDR11_1st); PF23752 (Beta-prop_WDR11_2nd); PF23753 (TPR_WDR11)
InterPro	-
eggNOG	-
NR	GeneID:130988263

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057768049.1`
2	Cytosol	细胞质基质	0.40000	`XP_057768049.1`
3	Trans-golgi network	Trans-golgi network	0.40000	`XP_057768049.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057768049.1`
5	Nucleus	细胞核	0.00000	`XP_057768049.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:6446700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B44
`Chr6:6446908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:6446938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B127,B18,D8
`Chr6:6448702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,C53,C61,D3
`Chr6:6448710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B3,B47,B53,B58
`Chr6:6448741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B51
`Chr6:6452017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B29,C57
`Chr6:6454268`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,B41,B44
`Chr6:6454292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,B41,B44
`Chr6:6454456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B16,C42
`Chr6:6454487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr6:6455088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B78,C50,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768049.1

1324 aa

662

1324

Beta-prop_WDR11_1st

Beta-prop_WDR11_2nd

TPR_WDR11

PF23751 Beta-prop_WDR11_1st 16-486 aa PF23752 Beta-prop_WDR11_2nd 488-891 aa PF23753 TPR_WDR11 919-1316 aa

XP_057768050.1

1324 aa

662

1324

Beta-prop_WDR11_1st

Beta-prop_WDR11_2nd

TPR_WDR11

PF23751 Beta-prop_WDR11_1st 16-486 aa PF23752 Beta-prop_WDR11_2nd 488-891 aa PF23753 TPR_WDR11 919-1316 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768049.1`	Pfam	`PF23751`	Beta-prop_WDR11_1st	Repeat	16	486	8.1e-212	704.8	WDR11 first beta-propeller
`XP_057768049.1`	Pfam	`PF23752`	Beta-prop_WDR11_2nd	Repeat	488	891	2.3e-228	758.2	WDR11 second beta-propeller
`XP_057768049.1`	Pfam	`PF23753`	TPR_WDR11	Repeat	919	1316	1.3e-205	683.7	WDR11 TPR domain
`XP_057768050.1`	Pfam	`PF23751`	Beta-prop_WDR11_1st	Repeat	16	486	8.1e-212	704.8	WDR11 first beta-propeller
`XP_057768050.1`	Pfam	`PF23752`	Beta-prop_WDR11_2nd	Repeat	488	891	2.3e-228	758.2	WDR11 second beta-propeller
`XP_057768050.1`	Pfam	`PF23753`	TPR_WDR11	Repeat	919	1316	1.3e-205	683.7	WDR11 TPR domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912066.1
CCGACAAAATCGATTTATTGGAAACATAATTATGATGGTAGTAGTGTATTTGGAAATGGAGCAAGATCCATGAGACGACATTACATTTTCGGACATCAACTTCAACTCTGTCTCTCTGTTTTTCCAACGTGCCCGCCTTGCATGCTGTAAACTCCAGATCTCTCTCTCCCTCACTCTCCCCCCTCTTCCTCTCTCTCCATTTTCTTCTTCTTCATTATACTCCAGCTCCTCACACAAGCCATTGATCTGCAGTAGTGGCA...

XM_057912067.1
ATGGTAGTAGTGTATTTGGAAATGGAGCAAGATCCATGAGACGACATTACATTTTCGGACATCAACTTCAACTCTGTCTCTCTGTTTTTCCAACGTGCCCGCCTTGCATGCTTAGTGGCATAATTGAGCAAACCCACCTAGATGCCCAGCGAGCCCTCCTCCGCCTCATGGGACTGCATTCTCCCGGGGCCGCCCTCCAAGCACAACGGCGGATCCGCCGACCTCTCCACCGCCGGCCTCCTCGCCTACGCCGCCGGCAG...

CDS

2 records

下载 CDS FASTA

LOC130988263
ATGCCCAGCGAGCCCTCCTCCGCCTCATGGGACTGCATTCTCCCGGGGCCGCCCTCCAAGCACAACGGCGGATCCGCCGACCTCTCCACCGCCGGCCTCCTCGCCTACGCCGCCGGCAGCTCCGTCGCCATCCTCGACACCCACTCGATGCAGCTCGTCTCCACCCTCCCGCTCCCCCCGCCCTCCTCCTCCGCCGCCTCCGCCTTCATCACCGCCGTCAGGTGGTCCCCCCTCTCCCTGCCCCACCACCTCCTCGAGAC...

Protein

2 records

下载 Protein FASTA

XP_057768049.1
MPSEPSSASWDCILPGPPSKHNGGSADLSTAGLLAYAAGSSVAILDTHSMQLVSTLPLPPPSSSAASAFITAVRWSPLSLPHHLLETDASSPHLQLAVGDRHGRICLLDFRSKSPAFFFDTANPNSSKLGVQDLCWIQTRLDSWCLAAISGPSLLSIYNATTGRCFFKYDASPEYFSCIRRDPFDSCHSCALGLRGFLLSVKLLGDESEKDVMLKELQVRTDATELHRLERDSANGSSNGAPVSSLFPNYVAKFTFSPHW...

XP_057768050.1
MPSEPSSASWDCILPGPPSKHNGGSADLSTAGLLAYAAGSSVAILDTHSMQLVSTLPLPPPSSSAASAFITAVRWSPLSLPHHLLETDASSPHLQLAVGDRHGRICLLDFRSKSPAFFFDTANPNSSKLGVQDLCWIQTRLDSWCLAAISGPSLLSIYNATTGRCFFKYDASPEYFSCIRRDPFDSCHSCALGLRGFLLSVKLLGDESEKDVMLKELQVRTDATELHRLERDSANGSSNGAPVSSLFPNYVAKFTFSPHW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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