当前解析结果
SmilChr06G000732| 统一新 Gene ID | SmilChr06G000732 |
|---|---|
| 名称 | SmilChr06G000732 |
| 描述 | equilibrative nucleotide transporter 8 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 6753396 - 6755476 / + |
| NCBI Gene ID | LOC130988284 |
|---|---|
| GeneID | 130988284 |
| locus_tag | - |
| NCBI Name | LOC130988284 |
| 原始查询 | SmilChr06G000732 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | equilibrative nucleotide transporter 8 |
| 产物 | equilibrative nucleotide transporter 8 |
| Arabidopsis | AT1G02630 (AT1G02630)Nucleoside transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:839240] identity=58.9; qcov=0.99; evalue=2.23e-166; confidence=high |
| Rice | Os08g0205200 (OsENT1)- identity=47.5; qcov=1.01; evalue=1.01e-112; confidence=high |
| GO | GO:0005337 (nucleoside transmembrane transporter activity); GO:0005886 (plasma membrane); GO:1901642 (nucleoside transmembrane transport) |
| KEGG | smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01733 (Nucleoside_tran) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988284 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057768070.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057768070.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057768070.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057768070.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057768070.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:6753923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr6:6753965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D3,D4 |
Chr6:6754025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B71,B82,C47,C60 |
Chr6:6754108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C40 |
Chr6:6754727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:6754817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D3,D4 |
Chr6:6755039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr6:6755126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C2,C32 |
Chr6:6755246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr6:6755308 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768070.1PF01733
Nucleoside_tran 117-211 aa
PF01733
Nucleoside_tran 227-388 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768070.1 |
Pfam | PF01733 |
Nucleoside_tran | Family | 117 | 211 | 1.1e-56 | 193.2 | Nucleoside transporter |
XP_057768070.1 |
Pfam | PF01733 |
Nucleoside_tran | Family | 227 | 388 | 1.1e-56 | 193.2 | Nucleoside transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。