Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000740`

染色体: Chr06 坐标: 6846669-6851541 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000740`
名称	SmilChr06G000740
描述	uncharacterized SmilChr06G000740
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	6846669 - 6851541 / `-`

ID 对照

NCBI Gene ID	`LOC130988290`
GeneID	`130988290`
locus_tag	`-`
NCBI Name	`LOC130988290`
原始查询	`SmilChr06G000740`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:832608]; symbol=AT5G25360; hit=AT5G25360; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:832608]; symbol=AT5G25360; hit=AT5G25360; species=arabidopsis; confidence=high
Arabidopsis	`AT5G25360` (AT5G25360) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:832608] identity=66.2; qcov=0.863; evalue=9.1e-68; confidence=high
Rice	`Os02g0201000` (HSP23.6) - identity=61.9; qcov=0.886; evalue=3.22e-61; confidence=high
GO	-
KEGG	-
Pfam	PF13259 (clamp_Gag1-like)
InterPro	-
eggNOG	-
NR	GeneID:130988290

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057768082.1`
2	Nucleus	细胞核	0.60000	`XP_057768082.1`
3	Cytosol	细胞质基质	0.20000	`XP_057768082.1`
4	Chromosome	染色体	0.00000	`XP_057768083.1`
5	Centromere	着丝粒	0.00000	`XP_057768083.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:6846943`	`AC`	`A`	1bp_deletion	frameshift_variant	45	A1,A10,A23,A8,B106,B119,B130,B136,B139,B14,B16,B17,B34,B37,B4,B45,B52,B57,B64,B75,B76,B8,B89,B90,B92,C10,C12,C18,C21,C29,C30,C32,C35,C5,C64,C66,C68,C72,C75,C81,C84,C87,D10,D11,D4
`Chr6:6847005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B44,C17,C27
`Chr6:6847032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B61,C39,C56
`Chr6:6847335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr6:6847402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,B86
`Chr6:6850792`	`GA`	`G`	1bp_deletion	frameshift_variant	83	A15,A19,A2,A3,A4,A5,A9,B100,B102,B105,B106,B108,B109,B110,B112,B115,B118,B122,B125,B126,B127,B13,B132,B140,B17,B2,B21,B24,B25,B28,B3,B32,B38,B39,B40,B44,B49,B50,B65,B67,B72,B77,B79,B81,B82,B85,B88,B90,B92,B94,B95,B99,C10,C11,C12,C13,C14,C18,C19,C23,C26,C27,C29,C30,C36,C44,C45,C46,C48,C5,C54,C55,C56,C59,C7,C74,C75,C80,C83,D3,D6,D7,D9
`Chr6:6850805`	`C`	`T`	EMS_canonical_SNV	stop_gained	159	A11,A13,A14,A15,A18,A19,A2,A21,A25,A3,A4,A5,A6,A9,B10,B100,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B112,B115,B118,B120,B121,B122,B125,B126,B127,B128,B129,B13,B130,B132,B134,B136,B140,B17,B2,B21,B24,B25,B28,B29,B3,B30,B31,B32,B34,B35,B37,B38,B39,B40,B44,B45,B47,B49,B50,B52,B54,B55,B56,B57,B60,B62,B65,B67,B7,B70,B71,B72,B73,B75,B76,B77,B79,B81,B82,B85,B87,B88,B89,B90,B92,B94,B95,B97,B98,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C19,C2,C20,C24,C26,C27,C28,C29,C3,C30,C31,C36,C4,C41,C42,C43,C44,C45,C46,C47,C48,C5,C52,C54,C55,C56,C57,C59,C6,C62,C66,C68,C7,C71,C73,C74,C75,C77,C78,C79,C80,C81,C82,C83,C86,C87,C9,D10,D2,D3,D6,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768082.1

175 aa

175

clamp_Gag1-like

PF13259 clamp_Gag1-like 74-175 aa

XP_057768083.1

177 aa

177

clamp_Gag1-like

PF13259 clamp_Gag1-like 74-158 aa

XP_057768084.1

175 aa

175

clamp_Gag1-like

PF13259 clamp_Gag1-like 74-175 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768082.1`	Pfam	`PF13259`	clamp_Gag1-like	Domain	74	175	4.1e-24	86.2	Gag1-like, clamp domain
`XP_057768083.1`	Pfam	`PF13259`	clamp_Gag1-like	Domain	74	158	4.9e-14	53.5	Gag1-like, clamp domain
`XP_057768084.1`	Pfam	`PF13259`	clamp_Gag1-like	Domain	74	175	4.1e-24	86.2	Gag1-like, clamp domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912101.1
GACTCCAATACTGGAAAGGACCCACCTGTATTTCGGATCCGAATGTTAATATTAATACTAAAATATTTAGATTGATGATATTTTTGGGAGTTTTGGTGTGTGTATTTTTTTTAATTAAAGATTAAAGATTTATAGTTTGGGAGTTAATTCACTAATTGGGAAGGCAAACAGTATTTTGTTGATTACCTGTCGACTAACCCGCTCCCTCTTGTCCAAGAATTCACCATCTAAAGCAATGTCCCATTTTCCCAAAACTTTAT...

XM_057912100.1
TTTGTTGATTACCTGTCGACTAACCCGCTCCCTCTTGTCCAAGAATTCACCATCTAAAGCAATGTCCCATTTTCCCAAAACTTTATCTTTAGCATTCACTGATTTGTTATTTCGACACCCATCTTTCTTAATCACTCGTATAGTAAGCATATAAAAGGGGCATAATTTACAGTCTAATCGTTGTGGATAAGGGTCATAATCACATCATCCGCATCAAGAAACAAAGAAAATCTTGACTTTTTACTGTAAAATCTCTACGT...

CDS

3 records

下载 CDS FASTA

LOC130988290
ATGTATAGATATATGATGCTGTACAGTTCGTTCAGTTCTTGGATCAGTCATTTCCTTGCTTGCATGGGAAGTTGTATTGGTTGTTGTGATAAATCTCAACCCATCACTGCTGTGGACGAACCATCGAAAGGGCTGAGGATTCAAGGCCAGCTGGTGAAGAAACAAAGCATTTCAGACGACTTCTGGAGCACCAGCACGTGTGATTTGTTGGAGAACAGCGCGCTTCAGTCACAGAGAAGCTTTTCATCAATCAGCGTCTC...

Protein

3 records

下载 Protein FASTA

XP_057768082.1
MYRYMMLYSSFSSWISHFLACMGSCIGCCDKSQPITAVDEPSKGLRIQGQLVKKQSISDDFWSTSTCDLLENSALQSQRSFSSISVSNQSVSCSGSGSNPPEFVNHGLLLWNQSRLQWVGTKKPQTHRKNKEPVLSWNASYENLLGTSKRFPQPVPLSEMVDFLVDIWDQEGLYD

XP_057768083.1
MYRYMMLYSSFSSWISHFLACMGSCIGCCDKSQPITAVDEPSKGLRIQGQLVKKQSISDDFWSTSTCDLLENSALQSQRSFSSISVSNQSVSCSGSGSNPPEFVNHGLLLWNQSRLQWVGTKKPQTHRKNKEPVLSWNASYENLLGTSKRFPQPVPLSVSYSSSSCYFFSCDSVLDS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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