当前解析结果
SmilChr06G000749| 统一新 Gene ID | SmilChr06G000749 |
|---|---|
| 名称 | SmilChr06G000749 |
| 描述 | leucine-rich repeat receptor-like protein kinase PXC2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 6960808 - 6962383 / - |
| NCBI Gene ID | LOC130988297 |
|---|---|
| GeneID | 130988297 |
| locus_tag | - |
| NCBI Name | LOC130988297 |
| 原始查询 | SmilChr06G000749 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | leucine-rich repeat receptor-like protein kinase PXC2 |
| 产物 | leucine-rich repeat receptor-like protein kinase PXC2 |
| Arabidopsis | AT3G56370 (AT3G56370)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824804] identity=59.1; qcov=1.01; evalue=7.56e-137; confidence=high |
| Rice | Os03g0335500- identity=56.5; qcov=1.01; evalue=3.92e-135; confidence=high |
| GO | GO:0004713 (protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988297 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768088.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057768088.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057768088.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057768088.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057768088.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:6961227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr6:6961339 |
G |
GA |
1bp_insertion | frameshift_variant | 14 | A3,B11,B133,B19,B24,B53,B76,B93,C11,C14,C25,C42,C69,C79 |
Chr6:6961370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,B78,C23 |
Chr6:6961387 |
TTC |
T |
2bp_deletion | frameshift_variant | 5 | B111,B112,C12,C46,C54 |
Chr6:6961387 |
TTC |
T |
2bp_deletion | CDS_variant | 5 | B111,B112,C12,C46,C54 |
Chr6:6961472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B18,B45,C75 |
Chr6:6961495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr6:6961511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr6:6961547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B14,B77,C28,C46 |
Chr6:6962086 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B10 |
Chr6:6962086 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B10 |
Chr6:6962095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768088.1PF00560
LRR_1 43-65 aa
PF13855
LRR_8 43-102 aa
PF00560
LRR_1 67-89 aa
PF07714
PK_Tyr_Ser-Thr 247-369 aa
PF00069
Pkinase 248-371 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768088.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 43 | 65 | 1.7e-12 | 45.6 | Leucine Rich Repeat |
XP_057768088.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 43 | 102 | 9.7e-10 | 38.8 | Leucine rich repeat |
XP_057768088.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 67 | 89 | 1.7e-12 | 45.6 | Leucine Rich Repeat |
XP_057768088.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 247 | 369 | 2.2e-19 | 70.5 | Protein tyrosine and serine/threonine kinase |
XP_057768088.1 |
Pfam | PF00069 |
Pkinase | Domain | 248 | 371 | 6.3e-18 | 65.8 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。