当前解析结果
SmilChr06G000754| 统一新 Gene ID | SmilChr06G000754 |
|---|---|
| 名称 | SmilChr06G000754 |
| 描述 | uncharacterized SmilChr06G000754 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 6989144 - 6989678 / + |
| NCBI Gene ID | LOC130990420 |
|---|---|
| GeneID | 130990420 |
| locus_tag | - |
| NCBI Name | LOC130990420 |
| 原始查询 | SmilChr06G000754 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828043]; symbol=AT4G01200; hit=AT4G01200; species=arabidopsis; confidence=medium |
| 产物 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828043]; symbol=AT4G01200; hit=AT4G01200; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G01200 (AT4G01200)Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:828043] identity=46.9; qcov=0.774; evalue=1.03e-29; confidence=medium |
| Rice | Os01g0659800- identity=34.6; qcov=0.911; evalue=1.06e-14; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990420 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057770638.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057770638.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057770638.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057770638.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057770638.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:6989150 |
ATT |
A |
2bp_deletion | frameshift_variant | 54 | A16,A19,A21,A23,A6,B1,B102,B103,B104,B117,B119,B12,B120,B129,B131,B136,B137,B15,B18,B2,B21,B26,B27,B31,B46,B48,B49,B5,B50,B55,B6,B74,B77,B8,B83,B95,C10,C16,C18,C27,C31,C32,C33,C4,C43,C45,C53,C63,C76,C78,C85,D10,D2,D5 |
Chr6:6989303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr6:6989340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,B86 |
Chr6:6989355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,D10 |
Chr6:6989374 |
T |
TCG |
2bp_insertion | frameshift_variant | 57 | A10,A14,A19,A21,A6,B102,B103,B110,B112,B117,B12,B121,B124,B130,B15,B2,B21,B31,B39,B47,B48,B50,B54,B55,B65,B67,B82,B84,B85,B94,C10,C18,C20,C26,C27,C32,C33,C37,C39,C43,C44,C47,C48,C50,C53,C55,C56,C6,C63,C65,C68,C75,C78,C9,D1,D5,D8 |
Chr6:6989375 |
GAA |
G |
2bp_deletion | frameshift_variant | 57 | A10,A14,A19,A21,A6,B102,B103,B110,B112,B117,B12,B121,B124,B130,B15,B2,B21,B31,B39,B47,B48,B50,B54,B55,B65,B67,B82,B84,B85,B94,C10,C18,C20,C26,C27,C32,C33,C37,C39,C43,C44,C47,C48,C50,C53,C55,C56,C6,C63,C65,C68,C75,C78,C9,D1,D5,D8 |
Chr6:6989379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B44 |
Chr6:6989381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,B44 |
Chr6:6989389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B108,C23,C24,C82 |
Chr6:6989427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr6:6989457 |
TA |
T |
1bp_deletion | frameshift_variant | 4 | B29,B47,C76,D1 |
Chr6:6989457 |
TA |
T |
1bp_deletion | CDS_variant | 4 | B29,B47,C76,D1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。