当前解析结果
SmilChr06G000760| 统一新 Gene ID | SmilChr06G000760 |
|---|---|
| 名称 | SmilChr06G000760 |
| 描述 | uncharacterized SmilChr06G000760 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 7031549 - 7034548 / + |
| NCBI Gene ID | LOC130990422 |
|---|---|
| GeneID | 130990422 |
| locus_tag | - |
| NCBI Name | LOC130990422 |
| 原始查询 | SmilChr06G000760 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=low |
| 产物 | MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=26.4; qcov=0.625; evalue=4.03e-52; confidence=low |
| Rice | Os12g0597300- identity=26.2; qcov=0.667; evalue=2.37e-50; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130990422 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057770640.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057770640.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057770640.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057770640.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057770640.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:7031555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr6:7031562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B128 |
Chr6:7031574 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A13,B100,B107,B117,B121,B122,B123,B13,B31,B34,B35,B44,B5,B85,B88,B9,C17,C27,C3,C33,C36,C45,C5,C74,C82 |
Chr6:7031716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C40 |
Chr6:7031728 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr6:7031731 |
G |
A |
EMS_canonical_SNV | stop_gained | 35 | A21,A3,B1,B101,B105,B110,B122,B136,B140,B22,B33,B4,B60,B62,B64,B65,B82,B85,C12,C23,C31,C49,C5,C53,C55,C57,C59,C74,C79,C82,C83,C86,C9,D1,D9 |
Chr6:7031768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:7031950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B55,B75,B78,C23 |
Chr6:7031958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr6:7031993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr6:7031994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr6:7031999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057770640.1PF00872
Transposase_mut 384-483 aa
PF10551
MULE 385-479 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057770640.1 |
Pfam | PF00872 |
Transposase_mut | Family | 384 | 483 | 2.1e-10 | 40.8 | Transposase, Mutator family |
XP_057770640.1 |
Pfam | PF10551 |
MULE | Domain | 385 | 479 | 4.3e-20 | 72.6 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。