Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000763`

染色体: Chr06 坐标: 7073968-7077280 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000763`
名称	SmilChr06G000763
描述	trihelix transcription factor ASIL2-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	7073968 - 7077280 / `-`

ID 对照

NCBI Gene ID	`LOC130988309`
GeneID	`130988309`
locus_tag	`-`
NCBI Name	`LOC130988309`
原始查询	`SmilChr06G000763`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	trihelix transcription factor ASIL2-like
产物	trihelix transcription factor ASIL2-like
Arabidopsis	`AT3G24490` (AT3G24490) Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:822039] identity=55.3; qcov=0.807; evalue=4.7e-78; confidence=high
Rice	`Os01g0718900` - identity=33.5; qcov=0.813; evalue=1.14e-34; confidence=low
GO	GO:0000976 (transcription cis-regulatory region binding); GO:0005634 (nucleus)
KEGG	-
Pfam	PF10545 (MADF_DNA_bdg); PF13837 (Myb_DNA-bind_4)
InterPro	-
eggNOG	-
NR	GeneID:130988309

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768105.1`
2	Chromosome	染色体	0.00000	`XP_057768105.1`
3	Centromere	着丝粒	0.00000	`XP_057768105.1`
4	Chromatin	染色质	0.00000	`XP_057768105.1`
5	Telomere	端粒	0.00000	`XP_057768105.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:7076276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B103,B28,D5
`Chr6:7076349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr6:7076351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B124,B25,B62,C75,C84
`Chr6:7076372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B103,B138,B99,C37
`Chr6:7076389`	`G`	`A`	EMS_canonical_SNV	stop_gained	12	B23,B3,B33,B37,B51,B86,C16,C27,C36,C45,C47,C64
`Chr6:7076395`	`CCT`	`C`	2bp_deletion	frameshift_variant	18	A16,B126,B130,B135,B28,B34,B65,B71,B91,B93,C14,C30,C44,C46,C57,C7,C72,D8
`Chr6:7076461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,C43
`Chr6:7076464`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr6:7076484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr6:7076624`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr6:7076656`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B95,C59,D7
`Chr6:7076696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B95,C59,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768105.1

305 aa

152

305

Myb_DNA-bind_4

MADF_DNA_bdg

PF13837 Myb_DNA-bind_4 71-156 aa PF10545 MADF_DNA_bdg 90-156 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768105.1`	Pfam	`PF13837`	Myb_DNA-bind_4	Domain	71	156	3.1e-16	60.2	Myb/SANT-like DNA-binding domain
`XP_057768105.1`	Pfam	`PF10545`	MADF_DNA_bdg	Domain	90	156	0.00012	23.1	Alcohol dehydrogenase transcription factor Myb/SANT-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009090046.1
ATCTTCCACATATTTGAGTAGTTCCATTTTCTTCCTCTTCCCCCAAAACAGTGGCACAAAAAACCCTCAATCTCCAATCAGAACCCTACGCCGATGAAAAACCCCAATTCCTACTCTTACAGGAGCAGCACCGCTGTCGATTACGACGACGAGGACAACGATTTCGACGACAATGAAGACAACCCCGACAAGAGCTTCGCCCAGAACGGCAATTTCTACAATTTCGAGAATTCCAAGAGGCACCCCAAGAAGCGGAAGCT...

XM_057912122.1
AAATAGTTTATCTTCCACATATTTGAGTAGTTCCATTTTCTTCCTCTTCCCCCAAAACAGTGGCACAAAAAACCCTCAATCTCCAATCAGAACCCTACGCCGATGAAAAACCCCAATTCCTACTCTTACAGGAGCAGCACCGCTGTCGATTACGACGACGAGGACAACGATTTCGACGACAATGAAGACAACCCCGACAAGAGCTTCGCCCAGAACGGCAATTTCTACAATTTCGAGAATTCCAAGAGGCACCCCAAGAA...

CDS

1 records

下载 CDS FASTA

LOC130988309
ATGAAAAACCCCAATTCCTACTCTTACAGGAGCAGCACCGCTGTCGATTACGACGACGAGGACAACGATTTCGACGACAATGAAGACAACCCCGACAAGAGCTTCGCCCAGAACGGCAATTTCTACAATTTCGAGAATTCCAAGAGGCACCCCAAGAAGCGGAAGCTCGAATCATTCGTTTCCAACTACGAATTCGCGCCGCGCAGCGAGGCATGGAGCGAAGACGAGAGCTTCGTGCTGCTGGAGGTGTGGGGGGAGCG...

Protein

1 records

下载 Protein FASTA

XP_057768105.1
MKNPNSYSYRSSTAVDYDDEDNDFDDNEDNPDKSFAQNGNFYNFENSKRHPKKRKLESFVSNYEFAPRSEAWSEDESFVLLEVWGERYMELGRRSLRAEDWVDVMEKVAEMSGRERTEAECRSQLDVLKNKYKKEMAKVESGSVSKWVFFKKMDALLNLRTRGYGGLGCGLDSGEYVFMNPRVYLDRSNVLDEMRDSPGQSDEDNEEDGGDDDEEDLSGDNVVDDESARMLADSIQKFGEVYEKIEESKRRQMVELETMR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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