Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000767`

染色体: Chr06 坐标: 7146709-7147577 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000767`
名称	SmilChr06G000767
描述	RNA-binding protein involved in heterochromatin assembly dri1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	7146709 - 7147577 / `-`

ID 对照

NCBI Gene ID	`LOC130988314`
GeneID	`130988314`
locus_tag	`-`
NCBI Name	`LOC130988314`
原始查询	`SmilChr06G000767`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding protein involved in heterochromatin assembly dri1-like
产物	RNA-binding protein involved in heterochromatin assembly dri1-like
Arabidopsis	`AT2G26695` (AT2G26695) Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745562] identity=61.3; qcov=1.05; evalue=3.77e-51; confidence=high
Rice	`Os06g0141200` (OsZFP1) - identity=44; qcov=1.08; evalue=1.19e-33; confidence=medium
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF00641 (Zn_ribbon_RanBP)
InterPro	-
eggNOG	-
NR	GeneID:130988314

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768110.1`
2	Cytoplasm	细胞质	1.00000	`XP_057768110.1`
3	Nucleoplasm	核质	0.40000	`XP_057768110.1`
4	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057768110.1`
5	Stress granule	Stress granule	0.20000	`XP_057768110.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:7146988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B55,B78,C23
`Chr6:7147398`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768110.1

131 aa

131

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 6-32 aa PF00641 Zn_ribbon_RanBP 51-79 aa PF00641 Zn_ribbon_RanBP 101-131 aa

XP_057768111.1

131 aa

131

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 6-32 aa PF00641 Zn_ribbon_RanBP 51-79 aa PF00641 Zn_ribbon_RanBP 101-131 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768110.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	6	32	3.9e-14	52.3	Zn-finger in Ran binding protein and others
`XP_057768110.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	51	79	3.9e-14	52.3	Zn-finger in Ran binding protein and others
`XP_057768110.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	101	131	3.9e-14	52.3	Zn-finger in Ran binding protein and others
`XP_057768111.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	6	32	3.9e-14	52.3	Zn-finger in Ran binding protein and others
`XP_057768111.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	51	79	3.9e-14	52.3	Zn-finger in Ran binding protein and others
`XP_057768111.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	101	131	3.9e-14	52.3	Zn-finger in Ran binding protein and others

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912127.1
TGTGGGGTCCCACAATTGAAGGGCCTGACTAGTATATAAACCCCATGACATCCATTCTTCAAATTCACCACCTTCCAATTCCAATTCCAACAATACATCATATTTATTTTAATTTAATATTCCGAGAGAATGAGCAGAGACGGAGGAGATTGGATGTGCCAGGCGTGCCAGCACATCAACTTCAAGAAACGGGAGGCGTGCCAGCGCTGCGGCTGCCCCAAGTTCGCCACGCCGCCGGAGGTGGAGGCCTACGCCGCCGC...

XM_057912128.1
CATTCTTCAAATTCACCACCTTCCAATTCCAATTCCAACAATACATCATATTTATTTTAATTTAATATTCCGAGAGAATGAGCAGAGACGGAGGAGATTGGATGTGCCAGGCGTGCCAGCACATCAACTTCAAGAAACGGGAGGCGTGCCAGCGCTGCGGCTGCCCCAAGTTCGCCACGCCGCCGGAGGTGGAGGCCTACGCCGCCGCCCAGAGAACCGAGGTCATGGCCGGAGACTGGTATTGCAGCGGCATGAACTGC...

CDS

2 records

下载 CDS FASTA

LOC130988314
ATGAGCAGAGACGGAGGAGATTGGATGTGCCAGGCGTGCCAGCACATCAACTTCAAGAAACGGGAGGCGTGCCAGCGCTGCGGCTGCCCCAAGTTCGCCACGCCGCCGGAGGTGGAGGCCTACGCCGCCGCCCAGAGAACCGAGGTCATGGCCGGAGACTGGTATTGCAGCGGCATGAACTGCGGCGCCCACAACTACGCCAGCCGAAGCACCTGCTACCGCTGCGGCACCGCCAAGGCCTACTACGGCTACGGCGCTCC...

Protein

2 records

下载 Protein FASTA

XP_057768110.1
MSRDGGDWMCQACQHINFKKREACQRCGCPKFATPPEVEAYAAAQRTEVMAGDWYCSGMNCGAHNYASRSTCYRCGTAKAYYGYGAPDAAGYTYDAVPGWKTGDWICNRLGCAMHNYASRSECYKCKTPRE

XP_057768111.1
MSRDGGDWMCQACQHINFKKREACQRCGCPKFATPPEVEAYAAAQRTEVMAGDWYCSGMNCGAHNYASRSTCYRCGTAKAYYGYGAPDAAGYTYDAVPGWKTGDWICNRLGCAMHNYASRSECYKCKTPRE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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