当前解析结果
SmilChr06G000772| 统一新 Gene ID | SmilChr06G000772 |
|---|---|
| 名称 | SmilChr06G000772 |
| 描述 | ABC transporter G family member 32 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 7212702 - 7225147 / - |
| NCBI Gene ID | LOC130988319 |
|---|---|
| GeneID | 130988319 |
| locus_tag | - |
| NCBI Name | LOC130988319 |
| 原始查询 | SmilChr06G000772 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 32 |
| 产物 | ABC transporter G family member 32 |
| Arabidopsis | AT2G26910 (ABCG32)pleiotropic drug resistance 4 [Source:NCBI gene (formerly Entrezgene);Acc:817232] identity=74.7; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0177900 (PDR6)- identity=70.1; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF14510 (ABC_trans_N); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988319 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057768119.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057768119.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057768119.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057768119.1 |
| 5 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057768119.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:7213080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,D10 |
Chr6:7213621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,B140,B16,C15 |
Chr6:7215364 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B15,B80 |
Chr6:7215364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B15,B80 |
Chr6:7216178 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | A24,B7 |
Chr6:7216178 |
CT |
C |
1bp_deletion | CDS_variant | 2 | A24,B7 |
Chr6:7216436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:7216679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr6:7217524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C31,C35,C5,C56,C76 |
Chr6:7217753 |
A |
AAC |
2bp_insertion | frameshift_variant | 5 | B11,B24,C11,C63,D7 |
Chr6:7217753 |
A |
AAC |
2bp_insertion | CDS_variant | 5 | B11,B24,C11,C63,D7 |
Chr6:7220908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768119.1PF14510
ABC_trans_N 73-126 aa
PF00005
ABC_tran 151-333 aa
PF19055
ABC2_membrane_7 366-419 aa
PF01061
ABC2_membrane 488-699 aa
PF08370
PDR_assoc 704-766 aa
PF00005
ABC_tran 844-996 aa
PF01061
ABC2_membrane 1142-1355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768119.1 |
Pfam | PF14510 |
ABC_trans_N | Domain | 73 | 126 | 6.6e-07 | 30.3 | ABC-transporter N-terminal |
XP_057768119.1 |
Pfam | PF00005 |
ABC_tran | Domain | 151 | 333 | 1.3e-38 | 133.5 | ABC transporter |
XP_057768119.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 366 | 419 | 4.7e-16 | 59.4 | ABC-2 type transporter |
XP_057768119.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 488 | 699 | 5.1e-99 | 330.8 | ABC-2 type transporter |
XP_057768119.1 |
Pfam | PF08370 |
PDR_assoc | Family | 704 | 766 | 1.2e-28 | 99.3 | Plant PDR ABC transporter associated |
XP_057768119.1 |
Pfam | PF00005 |
ABC_tran | Domain | 844 | 996 | 1.3e-38 | 133.5 | ABC transporter |
XP_057768119.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1142 | 1355 | 5.1e-99 | 330.8 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。