当前解析结果
SmilChr06G000788| 统一新 Gene ID | SmilChr06G000788 |
|---|---|
| 名称 | SmilChr06G000788 |
| 描述 | peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 7395084 - 7403619 / - |
| NCBI Gene ID | LOC130988330 |
|---|---|
| GeneID | 130988330 |
| locus_tag | - |
| NCBI Name | LOC130988330 |
| 原始查询 | SmilChr06G000788 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 |
| 产物 | peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 |
| Arabidopsis | AT4G29010 (AIM1)Enoyl-CoA hydratase/isomerase family [Source:NCBI gene (formerly Entrezgene);Acc:829022] identity=69.8; qcov=0.985; evalue=0; confidence=high |
| Rice | Os02g0274100 (AIM1)- identity=67.9; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0003857 ((3S)-3-hydroxyacyl-CoA dehydrogenase (NAD+) activity); GO:0005777 (peroxisome); GO:0006635 (fatty acid beta-oxidation); GO:0070403 (NAD+ binding) |
| KEGG | smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00378 (ECH_1); PF00725 (3HCDH); PF02737 (3HCDH_N); PF16113 (ECH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988330 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057768128.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057768128.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768128.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768128.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768128.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:7397163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr6:7398976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,B13 |
Chr6:7399080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr6:7400373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B13,B67,B74,B82 |
Chr6:7400410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr6:7402394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,C35,C64 |
Chr6:7403108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,C42 |
Chr6:7403304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr6:7403313 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,C18,C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768128.1PF00378
ECH_1 13-242 aa
PF16113
ECH_2 17-191 aa
PF02737
3HCDH_N 310-488 aa
PF00725
3HCDH 491-584 aa
PF00725
3HCDH 623-702 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768128.1 |
Pfam | PF00378 |
ECH_1 | Domain | 13 | 242 | 8.6e-40 | 137.4 | Enoyl-CoA hydratase/isomerase |
XP_057768128.1 |
Pfam | PF16113 |
ECH_2 | Domain | 17 | 191 | 1.5e-22 | 81.3 | Enoyl-CoA hydratase/isomerase |
XP_057768128.1 |
Pfam | PF02737 |
3HCDH_N | Domain | 310 | 488 | 1.2e-57 | 195.5 | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain |
XP_057768128.1 |
Pfam | PF00725 |
3HCDH | Domain | 491 | 584 | 1.2e-27 | 97.0 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain |
XP_057768128.1 |
Pfam | PF00725 |
3HCDH | Domain | 623 | 702 | 1.2e-27 | 97.0 | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。