Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000793`

染色体: Chr06 坐标: 7462337-7464846 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000793`
名称	SmilChr06G000793
描述	rho guanine nucleotide exchange factor 8-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	7462337 - 7464846 / `-`

ID 对照

NCBI Gene ID	`LOC130988335`
GeneID	`130988335`
locus_tag	`-`
NCBI Name	`LOC130988335`
原始查询	`SmilChr06G000793`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rho guanine nucleotide exchange factor 8-like
产物	rho guanine nucleotide exchange factor 8-like
Arabidopsis	`AT3G24620` (ROPGEF8) RHO guanyl-nucleotide exchange factor 8 [Source:NCBI gene (formerly Entrezgene);Acc:822058] identity=58.5; qcov=1.04; evalue=4.58e-177; confidence=high
Rice	`Os05g0560100` (Os) - identity=63.9; qcov=0.826; evalue=3.29e-163; confidence=high
GO	GO:0005085 (guanyl-nucleotide exchange factor activity)
KEGG	-
Pfam	PF03759 (PRONE)
InterPro	-
eggNOG	-
NR	GeneID:130988335

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057768135.1`
2	Cytoplasm	细胞质	0.80000	`XP_057768133.1`
3	Cytosol	细胞质基质	0.40000	`XP_057768135.1`
4	Mitochondrion	线粒体	0.20000	`XP_057768132.1`
5	Mitochondrion membrane	线粒体膜	0.20000	`XP_057768132.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:7462720`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B97
`Chr6:7462720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr6:7462827`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,D11
`Chr6:7462883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,C22
`Chr6:7463069`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B17
`Chr6:7463069`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr6:7463614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr6:7463790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr6:7464210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768132.1

484 aa

242

484

PRONE

PF03759 PRONE 85-432 aa

XP_057768133.1

455 aa

228

455

PRONE

PF03759 PRONE 55-403 aa

XP_057768135.1

432 aa

216

432

PRONE

PF03759 PRONE 55-260 aa PF03759 PRONE 261-380 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768132.1`	Pfam	`PF03759`	PRONE	Family	85	432	1.4e-162	541.4	PRONE (Plant-specific Rop nucleotide exchanger)
`XP_057768133.1`	Pfam	`PF03759`	PRONE	Family	55	403	7e-163	542.4	PRONE (Plant-specific Rop nucleotide exchanger)
`XP_057768135.1`	Pfam	`PF03759`	PRONE	Family	55	260	7.6e-145	483.0	PRONE (Plant-specific Rop nucleotide exchanger)
`XP_057768135.1`	Pfam	`PF03759`	PRONE	Family	261	380	7.6e-145	483.0	PRONE (Plant-specific Rop nucleotide exchanger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912149.1
GCTATGGATGCTTTCCCGGGCTTCTTGGGCATGCTCGAAAAGCTGAGCCATTCATTATTGTATGTGTTTCTCTCTCCATTTTAGAAACCTGCTGCTAATCAGGTCATCCAATTGCACCCCTCCAAAAAAGAAACAAGTTGGAAAAAACAAAATCAAATCGATGTTTTCCTGGCAGTAGTCTGCCATAGTTTGTCTGCAAATGATTGGAAGGGAAACTGTTGAGAATATATATTAAGTAGAGAGAGAGAGAGAAATTAAGA...

XM_057912152.1
CTATGGATGCTTTCCCGGGCTTCTTGGGCATGCTCGAAAAGCTGAGCCATTCATTATTGTATGTGTTTCTCTCTCCATTTTAGAAACCTGCTGCTAATCAGGTCATCCAATTGCACCCCTCCAAAAAAGAAACAAGTTGGAAAAAACAAAATCAAATCGATGTTTTCCTGGCAGTAGTCTGCCATAGTTTGTCTGCAAATGATTGGAAGGGAAACTGTTGAGAATATATATTAAGTAGAGAGAGAGAGAGAAATTAAGAT...

CDS

3 records

下载 CDS FASTA

LOC130988335
ATGCAAGCATACAGCAGTGAAGAACAAGAAGATGGAGAGACTGTTGAATCTATGGAAGGTGAGCAAGCAGAAAGTGTTAGTGAGAAGGAGAGCGCCTGCGTTGTTAGTAATGGGGCAGCAACAGAGGCAGCAGCAGCAGCTCCTGCAAAGAAGAAGCAAGTTTCAGAAATGGACATGATGAAGGAGAGGTTTGCCAAGCTGCTCCTCGGCGAGGACATGTCCGGCGGCGGCAAGGGCGTCTCCTCCGCGCTCGCCTTGTC...

Protein

3 records

下载 Protein FASTA

XP_057768132.1
MERLLNLWKVSKQKVLVRRRAPALLVMGQQQRQQQQLLQRRSKFQVFLTFCCDCIHRFISKRGDKDKDLEDPCLNLTLLPFFGLEMDMMKERFAKLLLGEDMSGGGKGVSSALALSNALTNLAASVFGEQCKLEPMSEDRKARWVREVGWLVSVTDYIVEFVASEQKGKDGTNMEIMVTQQRKDLLMNIPALRKLDTMLLDTLDNFKNEQEYWYVSKDAEESEKGFQRGDKWWLPTIKVPPKGLSEDSRIFLQKQKESVV...

XP_057768133.1
MQAYSSEEQEDGETVESMEGEQAESVSEKESACVVSNGAATEAAAAAPAKKKQVSEMDMMKERFAKLLLGEDMSGGGKGVSSALALSNALTNLAASVFGEQCKLEPMSEDRKARWVREVGWLVSVTDYIVEFVASEQKGKDGTNMEIMVTQQRKDLLMNIPALRKLDTMLLDTLDNFKNEQEYWYVSKDAEESEKGFQRGDKWWLPTIKVPPKGLSEDSRIFLQKQKESVVQVLKASMAINAQILSDMDVPESYMETLPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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