Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000817`

染色体: Chr06 坐标: 7692165-7694848 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000817`
名称	SmilChr06G000817
描述	uncharacterized SmilChr06G000817
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	7692165 - 7694848 / `-`

ID 对照

NCBI Gene ID	`LOC130988354`
GeneID	`130988354`
locus_tag	`-`
NCBI Name	`LOC130988354`
原始查询	`SmilChr06G000817`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541]; symbol=AT3G29010; hit=AT3G29010; species=arabidopsis; confidence=high
产物	Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541]; symbol=AT3G29010; hit=AT3G29010; species=arabidopsis; confidence=high
Arabidopsis	`AT3G29010` (AT3G29010) Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541] identity=66.3; qcov=0.913; evalue=6.78e-98; confidence=high
Rice	`Os08g0435800` (OsLPLA) - identity=66.1; qcov=0.851; evalue=1.89e-89; confidence=high
GO	GO:0005739 (mitochondrion); GO:0036211 (protein modification process)
KEGG	-
Pfam	PF21948 (LplA-B_cat)
InterPro	-
eggNOG	-
NR	GeneID:130988354

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057768148.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057768148.1`
3	Nucleus	细胞核	0.00000	`XP_057768148.1`
4	Chromosome	染色体	0.00000	`XP_057768148.1`
5	Centromere	着丝粒	0.00000	`XP_057768148.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:7692557`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C61,D3
`Chr6:7693448`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A16,C83
`Chr6:7693448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C83
`Chr6:7693572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,B82
`Chr6:7693908`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C43
`Chr6:7693908`	`AC`	`A`	1bp_deletion	CDS_variant	1	C43
`Chr6:7693944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,C12
`Chr6:7693972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr6:7694000`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C18,C34,C44
`Chr6:7694023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr6:7694546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,A23,B51,B52,C84
`Chr6:7694593`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768148.1

266 aa

133

266

LplA-B_cat

PF21948 LplA-B_cat 25-221 aa

XP_057768149.1

234 aa

117

234

LplA-B_cat

PF21948 LplA-B_cat 25-164 aa

XP_057768150.1

208 aa

104

208

LplA-B_cat

PF21948 LplA-B_cat 25-194 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768148.1`	Pfam	`PF21948`	LplA-B_cat	Domain	25	221	1.7e-28	100.7	Lipoyl protein ligase A/B catalytic domain
`XP_057768149.1`	Pfam	`PF21948`	LplA-B_cat	Domain	25	164	1.1e-22	81.6	Lipoyl protein ligase A/B catalytic domain
`XP_057768150.1`	Pfam	`PF21948`	LplA-B_cat	Domain	25	194	4.4e-28	99.3	Lipoyl protein ligase A/B catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057912167.1
TAATATAAAAATATAATTCAATCATTTATGACATGTGACATCCGGTTCATGTCACGACTTTGAATTGCAGAACCAATTTGGCGCCGGCAATCGGCTGTTCCGACCGCAAAAACCTCCGTTTTCTAGTATTCATGGCGGCATCTCAGGCAAGAAACGCTGGGCTGCCGATAATCAATTTTCTCCGGTTGAAAGGAGTGTCCATTTTGCAGCAATTGCATTTGGAAGAGAGGCTGCTGCGGACTTCGTCTGAAAACTGGTGC...

XM_057912166.1
AATATAAAAATATAATTCAATCATTTATGACATGTGACATCCGGTTCATGTCACGACTTTGAATTGCAGAACCAATTTGGCGCCGGCAATCGGCTGTTCCGACCGCAAAAACCTCCGTTTTCTAGTATTCATGGCGGCATCTCAGGCAAGAAACGCTGGGCTGCCGATAATCAATTTTCTCCGGTTGAAAGGAGTGTCCATTTTGCAGCAATTGCATTTGGAAGAGAGGCTGCTGCGGACTTCGTCTGAAAACTGGTGCA...

CDS

3 records

下载 CDS FASTA

LOC130988354
ATGGCGGCATCTCAGGCAAGAAACGCTGGGCTGCCGATAATCAATTTTCTCCGGTTGAAAGGAGTGTCCATTTTGCAGCAATTGCATTTGGAAGAGAGGCTGCTGCGGACTTCGTCTGAAAACTGGTGCATCATCAACGACGAAACAACCCGCCCCACCATCGTCATGGGTGTTTCAGGGAAACCTAAGGAACTTCTTGAAACTGATGCTGTTCTAAGAGATGAAATTCCAGTCATCCGAAGGTTTACAGGAGGTGGTAC...

Protein

3 records

下载 Protein FASTA

XP_057768148.1
MAASQARNAGLPIINFLRLKGVSILQQLHLEERLLRTSSENWCIINDETTRPTIVMGVSGKPKELLETDAVLRDEIPVIRRFTGGGTVIVDQGTIFVSFICNKDAIPGLQSYPRPIMSWSSLIYKNMFQGIGEFGLRENDYVLGNRKFGGNAQSITKNRWVHHTSFLWDYEVGNMGYLKMPTRVPEYRQARNHVEFICRLKEFMSRSDFINGTTDAVAAYFALRSPDADDIQNHSSQFEPSSKLLTRQELGDEASIDLVG...

XP_057768149.1
MAASQARNAGLPIINFLRLKGVSILQQLHLEERLLRTSSENWCIINDETTRPTIVMGVSGKPKELLETDAVLRDEIPVIRRFTGGGTVIVDQGTIFVSFICNKDAIPGLQSYPRPIMSWSSLIYKNMFQGIGEFGLRENDYVLGNRKFGGNAQSITKNRNHVEFICRLKEFMSRSDFINGTTDAVAAYFALRSPDADDIQNHSSQFEPSSKLLTRQELGDEASIDLVGTVSQAL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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