当前解析结果
SmilChr06G000819| 统一新 Gene ID | SmilChr06G000819 |
|---|---|
| 名称 | SmilChr06G000819 |
| 描述 | uncharacterized SmilChr06G000819 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 7719430 - 7722625 / + |
| NCBI Gene ID | LOC130988358 |
|---|---|
| GeneID | 130988358 |
| locus_tag | - |
| NCBI Name | LOC130988358 |
| 原始查询 | SmilChr06G000819 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541]; symbol=AT3G29010; hit=AT3G29010; species=arabidopsis; confidence=high |
| 产物 | Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541]; symbol=AT3G29010; hit=AT3G29010; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G29010 (AT3G29010)Biotin/lipoate A/B protein ligase family [Source:NCBI gene (formerly Entrezgene);Acc:822541] identity=58.1; qcov=0.89; evalue=2.49e-116; confidence=high |
| Rice | Os08g0435800 (OsLPLA)- identity=59.9; qcov=0.829; evalue=1.47e-111; confidence=high |
| GO | GO:0005739 (mitochondrion); GO:0036211 (protein modification process) |
| KEGG | - |
| Pfam | PF21948 (LplA-B_cat) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988358 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057768166.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057768166.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057768166.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057768166.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057768166.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:7720397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr6:7720408 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr6:7720451 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,C43,C78 |
Chr6:7720452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr6:7720472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B73,B79,C28,C56 |
Chr6:7720505 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | D10 |
Chr6:7720505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:7720529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B41,B44 |
Chr6:7720565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C43 |
Chr6:7720575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B57,C43,C83 |
Chr6:7720577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B37 |
Chr6:7720579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B140,B36,B81,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057768166.1PF21948
LplA-B_cat 51-247 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768166.1 |
Pfam | PF21948 |
LplA-B_cat | Domain | 51 | 247 | 2.5e-28 | 100.1 | Lipoyl protein ligase A/B catalytic domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。