当前解析结果
SmilChr06G000830| 统一新 Gene ID | SmilChr06G000830 |
|---|---|
| 名称 | SmilChr06G000830 |
| 描述 | uncharacterized SmilChr06G000830 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 7806098 - 7819972 / - |
| NCBI Gene ID | LOC130988364 |
|---|---|
| GeneID | 130988364 |
| locus_tag | - |
| NCBI Name | LOC130988364 |
| 原始查询 | SmilChr06G000830 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=medium |
| 产物 | hit=Os12g0142900; species=rice; confidence=medium |
| Arabidopsis | ATMG00860- identity=41.2; qcov=0.159; evalue=2.87e-30; confidence=weak |
| Rice | Os12g0142900- identity=39.7; qcov=0.563; evalue=1.07e-121; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF17919 (RT_RNaseH_2); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988364 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057768171.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057768171.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057768171.1 |
| 4 | Nucleus | 细胞核 | 0.40000 | XP_057768171.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057768171.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:7813892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B80,C47 |
Chr6:7813905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr6:7813966 |
G |
A |
EMS_canonical_SNV | stop_gained | 12 | B139,B14,B51,B57,B64,B74,B80,B87,C47,C55,C6,C9 |
Chr6:7813972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr6:7813988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C29 |
Chr6:7814037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,C52,C87 |
Chr6:7814047 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A19,B10,B99,C45 |
Chr6:7814047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B10,B99,C45 |
Chr6:7814055 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B136,B15,B66,C86 |
Chr6:7814057 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B34,C3 |
Chr6:7814065 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr6:7814106 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B128,C11,C69,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768171.1PF19259
Ty3_capsid 48-210 aa
PF03732
PEG10_N-capsid 49-127 aa
PF00098
zf-CCHC 300-316 aa
PF08284
RVP_2 390-518 aa
PF13650
Asp_protease_2 416-500 aa
PF13975
gag-asp_proteas 416-501 aa
PF30863
PRO_PEG10-RTL1 422-517 aa
PF00078
RVT_1 650-809 aa
PF17919
RT_RNaseH_2 873-930 aa
XP_057768172.1PF19259
Ty3_capsid 48-210 aa
PF03732
PEG10_N-capsid 49-127 aa
PF00098
zf-CCHC 300-316 aa
PF08284
RVP_2 390-518 aa
PF13650
Asp_protease_2 416-500 aa
PF13975
gag-asp_proteas 416-501 aa
PF30863
PRO_PEG10-RTL1 422-517 aa
PF00078
RVT_1 650-809 aa
PF17919
RT_RNaseH_2 873-930 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768171.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 48 | 210 | 3.8e-10 | 40.2 | Ty3 transposon capsid-like protein |
XP_057768171.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 49 | 127 | 2.4e-12 | 47.7 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057768171.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 300 | 316 | 0.00045 | 20.9 | Zinc knuckle |
XP_057768171.1 |
Pfam | PF08284 |
RVP_2 | Domain | 390 | 518 | 1.3e-27 | 96.9 | Retroviral aspartyl protease |
XP_057768171.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 416 | 500 | 2e-10 | 42.0 | Aspartyl protease |
XP_057768171.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 416 | 501 | 2e-09 | 38.6 | gag-polyprotein putative aspartyl protease |
XP_057768171.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 422 | 517 | 1.3e-08 | 35.9 | PEG10/RTL1 protease domain |
XP_057768171.1 |
Pfam | PF00078 |
RVT_1 | Domain | 650 | 809 | 6.2e-39 | 134.7 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057768171.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 873 | 930 | 1e-16 | 61.5 | RNase H-like domain found in reverse transcriptase |
XP_057768172.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 48 | 210 | 3.8e-10 | 40.2 | Ty3 transposon capsid-like protein |
XP_057768172.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 49 | 127 | 2.4e-12 | 47.7 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057768172.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 300 | 316 | 0.00045 | 20.9 | Zinc knuckle |
XP_057768172.1 |
Pfam | PF08284 |
RVP_2 | Domain | 390 | 518 | 1.3e-27 | 96.9 | Retroviral aspartyl protease |
XP_057768172.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 416 | 500 | 2e-10 | 42.0 | Aspartyl protease |
XP_057768172.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 416 | 501 | 2e-09 | 38.6 | gag-polyprotein putative aspartyl protease |
XP_057768172.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 422 | 517 | 1.3e-08 | 35.9 | PEG10/RTL1 protease domain |
XP_057768172.1 |
Pfam | PF00078 |
RVT_1 | Domain | 650 | 809 | 6.2e-39 | 134.7 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057768172.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 873 | 930 | 1e-16 | 61.5 | RNase H-like domain found in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。