Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr06G000860

染色体: Chr06 坐标: 8127758-8135321 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr06G000860
名称SmilChr06G000860
描述alpha/beta hydrolase domain-containing protein WAV2
染色体 / SeqIDChr06 / NC_080392.1
坐标与链方向8127758 - 8135321 / +

ID 对照

NCBI Gene IDLOC130988393
GeneID130988393
locus_tag-
NCBI NameLOC130988393
原始查询SmilChr06G000860

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述alpha/beta hydrolase domain-containing protein WAV2
产物alpha/beta hydrolase domain-containing protein WAV2
ArabidopsisAT5G20520 (WAV2)
alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832174]
identity=79.9; qcov=0.994; evalue=0; confidence=high
RiceOs07g0608300 (OsPOP16)
-
identity=71.7; qcov=0.99; evalue=3.91e-174; confidence=high
GOGO:0006508 (proteolysis); GO:0008236 (serine-type peptidase activity); GO:0008474 (palmitoyl-(protein) hydrolase activity); GO:0016020 (membrane)
KEGG-
PfamPF00326 (Peptidase_S9); PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4)
InterPro-
eggNOG-
NRGeneID:130988393

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057768200.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057768200.1
3 Lipid droplet 脂滴 0.20000 XP_057768200.1
4 Mitochondrion 线粒体 0.20000 XP_057768201.1
5 Nucleus 细胞核 0.00000 XP_057768200.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057768200.1
320 aa
N
1
160
320
Hydrolase_4
Abhydrolase_1
Peptidase_S9
C
PF12146 Hydrolase_4 104-201 aa PF00561 Abhydrolase_1 104-202 aa PF00326 Peptidase_S9 132-296 aa
XP_057768201.1
310 aa
N
1
155
310
Hydrolase_4
Abhydrolase_1
Peptidase_S9
C
PF12146 Hydrolase_4 104-201 aa PF00561 Abhydrolase_1 104-202 aa PF00326 Peptidase_S9 132-296 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057768200.1 Pfam PF12146 Hydrolase_4 Domain 104 201 3.4e-14 53.5 Serine aminopeptidase, S33
XP_057768200.1 Pfam PF00561 Abhydrolase_1 Domain 104 202 2.8e-13 50.8 alpha/beta hydrolase fold
XP_057768200.1 Pfam PF00326 Peptidase_S9 Domain 132 296 1.2e-14 55.1 Prolyl oligopeptidase family
XP_057768201.1 Pfam PF12146 Hydrolase_4 Domain 104 201 3.1e-14 53.6 Serine aminopeptidase, S33
XP_057768201.1 Pfam PF00561 Abhydrolase_1 Domain 104 202 2.5e-13 51.0 alpha/beta hydrolase fold
XP_057768201.1 Pfam PF00326 Peptidase_S9 Domain 132 296 1.1e-14 55.2 Prolyl oligopeptidase family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057912218.1
AACGCCGCCGTTTGATCATTTTAGTTCTGAACCCAGAAATGATAAAACACAAGGGAAAATCGTAAAGCCCCACCATTATTTTCTCTCTCACACATCAACAAGCAAAATTCAATTCCCTCTGCACATCGATCGACGATCCATGCTACGCACTCAGATACACCCACGAACACACTCAATCTTATTTAGAGAGATAAAGTAGAGAGAGAAATCAAGGGGGCAAAGCCGTGCGTCAATCCATGGTGTCGTTCGTGAGCGCGTTG...
XM_057912217.1
TTTTAGTTCTGAACCCAGAAATGATAAAACACAAGGGAAAATCGTAAAGCCCCACCATTATTTTCTCTCTCACACATCAACAAGCAAAATTCAATTCCCTCTGCACATCGATCGACGATCCATGCTACGCACTCAGATACACCCACGAACACACTCAATCTTATTTAGAGAGATAAAGTAGAGAGAGAAATCAAGGGGGCAAAGCCGTGCGTCAATCCATGGTGTCGTTCGTGAGCGCGTTGCTCTATGGAGTTGGCGGA...

CDS

2 records

下载 CDS FASTA
LOC130988393
ATGGTGTCGTTCGTGAGCGCGTTGCTCTATGGAGTTGGCGGAATCGTGGTGGCCGGCATGGCATTGCTCGTGGCTTTCCAGGAGAAGCTCGTCTACGTGCCTGTGCTGCCCGGCCTCACTAAATCCTACCCCATCACCCCTGCCCGCCTCCGCCTCCTATACGAGGATGTCTGGCTCACGTCATCTGACGGCGTCCGTCTCCATGCTTGGTTCATCAAGCTCGCCCCCGATTGTAAAGGTCCAACTATTCTATTCTTCCA...
LOC130988393
ATGGTGTCGTTCGTGAGCGCGTTGCTCTATGGAGTTGGCGGAATCGTGGTGGCCGGCATGGCATTGCTCGTGGCTTTCCAGGAGAAGCTCGTCTACGTGCCTGTGCTGCCCGGCCTCACTAAATCCTACCCCATCACCCCTGCCCGCCTCCGCCTCCTATACGAGGATGTCTGGCTCACGTCATCTGACGGCGTCCGTCTCCATGCTTGGTTCATCAAGCTCGCCCCCGATTGTAAAGGTCCAACTATTCTATTCTTCCA...

Protein

2 records

下载 Protein FASTA
XP_057768200.1
MVSFVSALLYGVGGIVVAGMALLVAFQEKLVYVPVLPGLTKSYPITPARLRLLYEDVWLTSSDGVRLHAWFIKLAPDCKGPTILFFQENAGNIAHRLEMVRIMLQRLQCNVFMLSYRGYGASEGFPSQHGITKDAQAALDHLIQRVDIDTSRIVVFGRSLGGAVGTVLVRNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGKGGSKGPKVLNFLVRSPWNTIDVIGEVKQPILLLSGLQDEMVPPSHMEMLYAKAAA...
XP_057768201.1
MVSFVSALLYGVGGIVVAGMALLVAFQEKLVYVPVLPGLTKSYPITPARLRLLYEDVWLTSSDGVRLHAWFIKLAPDCKGPTILFFQENAGNIAHRLEMVRIMLQRLQCNVFMLSYRGYGASEGFPSQHGITKDAQAALDHLIQRVDIDTSRIVVFGRSLGGAVGTVLVRNNPDKVAALILENTFTSILDMAGVLLPFLKWFIGKGGSKGPKVLNFLVRSPWNTIDVIGEVKQPILLLSGLQDEMVPPSHMEMLYAKAAA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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