当前解析结果
SmilChr06G000862| 统一新 Gene ID | SmilChr06G000862 |
|---|---|
| 名称 | SmilChr06G000862 |
| 描述 | ankyrin repeat-containing protein ITN1-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 8147506 - 8150073 / + |
| NCBI Gene ID | LOC130988395 |
|---|---|
| GeneID | 130988395 |
| locus_tag | - |
| NCBI Name | LOC130988395 |
| 原始查询 | SmilChr06G000862 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein ITN1-like |
| 产物 | ankyrin repeat-containing protein ITN1-like |
| Arabidopsis | AT5G51160 (AT5G51160)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=35.3; qcov=0.768; evalue=5.77e-53; confidence=medium |
| Rice | Os03g0281000- identity=30; qcov=0.774; evalue=1.06e-35; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13857 (Ank_5); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130988395 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057768203.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057768203.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057768203.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057768203.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057768203.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:8147850 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B98,C18,C44 |
Chr6:8147852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B131,B66 |
Chr6:8147861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B13,B53,C42 |
Chr6:8147880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:8147900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C35 |
Chr6:8147903 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B98,C18,C22 |
Chr6:8147923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C82 |
Chr6:8147963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C82 |
Chr6:8147964 |
C |
T |
EMS_canonical_SNV | stop_gained | 20 | A4,B127,B13,B18,B2,B37,B56,B7,B76,B96,C11,C19,C21,C31,C46,C65,C69,C70,C74,C85 |
Chr6:8147981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,B131,B66 |
Chr6:8147989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr6:8148007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C5,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057768203.1PF12796
Ank_2 5-93 aa
PF00023
Ank 38-58 aa
PF00023
Ank 71-94 aa
PF12796
Ank_2 169-216 aa
PF13857
Ank_5 169-216 aa
PF13606
Ank_3 175-204 aa
PF00023
Ank 176-208 aa
PF13962
PGG 277-396 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057768203.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 5 | 93 | 3e-28 | 98.9 | Ankyrin repeats (3 copies) |
XP_057768203.1 |
Pfam | PF00023 |
Ank | Repeat | 38 | 58 | 4.8e-24 | 83.8 | Ankyrin repeat |
XP_057768203.1 |
Pfam | PF00023 |
Ank | Repeat | 71 | 94 | 4.8e-24 | 83.8 | Ankyrin repeat |
XP_057768203.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 169 | 216 | 3e-28 | 98.9 | Ankyrin repeats (3 copies) |
XP_057768203.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 169 | 216 | 9.3e-22 | 77.6 | Ankyrin repeats (many copies) |
XP_057768203.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 175 | 204 | 1.2e-20 | 71.8 | Ankyrin repeat |
XP_057768203.1 |
Pfam | PF00023 |
Ank | Repeat | 176 | 208 | 4.8e-24 | 83.8 | Ankyrin repeat |
XP_057768203.1 |
Pfam | PF13962 |
PGG | Domain | 277 | 396 | 4.2e-29 | 101.4 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。