Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000863`

染色体: Chr06 坐标: 8153738-8157976 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000863`
名称	SmilChr06G000863
描述	protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	8153738 - 8157976 / `-`

ID 对照

NCBI Gene ID	`LOC130988396`
GeneID	`130988396`
locus_tag	`-`
NCBI Name	`LOC130988396`
原始查询	`SmilChr06G000863`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1-like
产物	protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1-like
Arabidopsis	`AT5G20610` (AT5G20610) EEIG1/EHBP1 protein amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832183] identity=44.6; qcov=1.08; evalue=0; confidence=medium
Rice	`Os01g0714100` - identity=54.7; qcov=0.407; evalue=6.47e-133; confidence=low
GO	-
KEGG	-
Pfam	PF01476 (LysM); PF10358 (NT-C2); PF21745 (PMI1_PMIR1-2_C)
InterPro	-
eggNOG	-
NR	GeneID:130988396

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057768204.1`
2	Nucleus membrane	核膜	0.40000	`XP_057768204.1`
3	Nucleus	细胞核	0.20000	`XP_057768205.1`
4	Chromosome	染色体	0.00000	`XP_057768204.1`
5	Centromere	着丝粒	0.00000	`XP_057768204.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:8153949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr6:8154021`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B102
`Chr6:8154021`	`TC`	`T`	1bp_deletion	CDS_variant	1	B102
`Chr6:8154040`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B102
`Chr6:8154040`	`A`	`AT`	1bp_insertion	CDS_variant	1	B102
`Chr6:8154043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr6:8154159`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B10,B113
`Chr6:8154245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr6:8154290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr6:8154524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B113
`Chr6:8154869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B53,C43,C78
`Chr6:8154890`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057768204.1

1145 aa

572

1145

NT-C2

PMI1_PMIR1-2_C

LysM

PF10358 NT-C2 97-244 aa PF21745 PMI1_PMIR1-2_C 694-841 aa PF01476 LysM 1099-1144 aa

XP_057768205.1

1011 aa

506

1011

NT-C2

PMI1_PMIR1-2_C

LysM

PF10358 NT-C2 2-110 aa PF21745 PMI1_PMIR1-2_C 560-707 aa PF01476 LysM 965-1010 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057768204.1`	Pfam	`PF10358`	NT-C2	Domain	97	244	6.3e-17	62.3	N-terminal C2 in EEIG1 and EHBP1 proteins
`XP_057768204.1`	Pfam	`PF21745`	PMI1_PMIR1-2_C	Domain	694	841	1.9e-53	181.8	PMI1/PMIR1-2, C-terminal domain
`XP_057768204.1`	Pfam	`PF01476`	LysM	Domain	1099	1144	4.6e-09	36.8	LysM domain
`XP_057768205.1`	Pfam	`PF10358`	NT-C2	Domain	2	110	2.4e-08	34.4	N-terminal C2 in EEIG1 and EHBP1 proteins
`XP_057768205.1`	Pfam	`PF21745`	PMI1_PMIR1-2_C	Domain	560	707	1.5e-53	182.1	PMI1/PMIR1-2, C-terminal domain
`XP_057768205.1`	Pfam	`PF01476`	LysM	Domain	965	1010	3.9e-09	37.0	LysM domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057912221.1
GAAAAAGACAGGGCCATCGGTGAAAAATCACTAAGCTGTCGTATTATTTTAGCTTTCAACTTTGAATCGAGCATGCTCACGCCAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGCTGGATTTGGCTCCTAAATTTCTTCAGCTCTAGTTTTTGTGAGGAGACAATGTTGTCGAAAGCAGATACCAGAAAGAAAATTGATGAGATTTCAAAAACTGGGAGATTCGCAAATGACCTTGAAACCATAAGCA...

XM_057912222.1
ACGCCAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGCTGGATTTGGCTCCTAAATTTCTTCAGCTCTAGTTTTTGTGAGGAGACAATGTTGTCGAAAGCAGATACCAGAAAGAAAATTGATGAGATTTCAAAAACTGGGAGATTCGCAAATGACCTTGAAACCATAAGCAAAGCCTTGTTTGCGGATAAACAACTGCATACGCTTCCTAGCTCTGCAGATTCTTGTAGATCCGAGGCTGTTGGAGAAT...

CDS

2 records

下载 CDS FASTA

LOC130988396
ATGTTGTCGAAAGCAGATACCAGAAAGAAAATTGATGAGATTTCAAAAACTGGGAGATTCGCAAATGACCTTGAAACCATAAGCAAAGCCTTGTTTGCGGATAAACAACTGCATACGCTTCCTAGCTCTGCAGATTCTTGTAGATCCGAGGCTGTTGGAGAATCACATTTGTCCGAACCTAAAACTAAGGCGGAGAAGGCTAAGGTCAATAAGCGAGATTCAGTTGAGAAAGAAAAGAAGCTTTCAATTTGGAGTTGGAG...

LOC130988396
ATGACATCCCCAACTAGGGTTCACGAAGGAGTAGCTAAGTTTGAGGAGCAGCTGATTCATTCTTGCTCTGTAAATGTTACTAGGAGCAGTACCAAGAATTTGGCGAAGTATGAGGCAAAAAATTACTTATTGTATGCTTCTGTTTATAATGCCCCCGAGCTTGATTTGGGGAAGCATCATATAGATTTGACTAGATTGCTACCTCTAACATTAGAGGAATTGGAAGAGGAGAAGAGCTCAGGGAAATGGACAACTAGTTT...

Protein

2 records

下载 Protein FASTA

XP_057768204.1
MLSKADTRKKIDEISKTGRFANDLETISKALFADKQLHTLPSSADSCRSEAVGESHLSEPKTKAEKAKVNKRDSVEKEKKLSIWSWRGLKALTSGRNRRFSCCFSLLVHSIEGLPSLFDDVCLVVHWKRQDGELMTSPTRVHEGVAKFEEQLIHSCSVNVTRSSTKNLAKYEAKNYLLYASVYNAPELDLGKHHIDLTRLLPLTLEELEEEKSSGKWTTSFRLSGKAGGATMNVSFGYIAVGNSREPSSKNNTPDILNLR...

XP_057768205.1
MTSPTRVHEGVAKFEEQLIHSCSVNVTRSSTKNLAKYEAKNYLLYASVYNAPELDLGKHHIDLTRLLPLTLEELEEEKSSGKWTTSFRLSGKAGGATMNVSFGYIAVGNSREPSSKNNTPDILNLRENRAMTESFVDQSDLKNELIIRRVGSLPATLVTLKQSAEDIKDLHEILPMPTSELYQSVNVLYQKLDEEIPNASVENKLDTGPFPSHLDSCKVNSFKPPDSDEKNPESEWETGELSVTEKGIEEFPKEHTRLEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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